Detailed information NTG0325362

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FK544_RS06585
• Genome accession: NZ_CP041304
• Coordinates: 1151098..1152090 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MSHS 133
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1146098..1157090

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FK544_RS06555 (FK544_06545)	ispD	1146159..1146869 (+)	711	WP_000246133.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FK544_RS06560 (FK544_06550)	ispF	1146869..1147348 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FK544_RS06565 (FK544_06555)	truD	1147345..1148394 (+)	1050	WP_000568955.1	tRNA pseudouridine(13) synthase TruD	-
FK544_RS06570 (FK544_06560)	surE	1148375..1149136 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
FK544_RS06575 (FK544_06565)	pcm	1149130..1149756 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
FK544_RS06580 (FK544_06570)	nlpD	1149941..1151035 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
FK544_RS06585 (FK544_06575)	rpoS	1151098..1152090 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
FK544_RS06590 (FK544_06580)	-	1152211..1152618 (-)	408	WP_001208064.1	MarR family transcriptional regulator	-
FK544_RS06595 (FK544_06585)	-	1152765..1153358 (+)	594	WP_000767730.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
FK544_RS06600 (FK544_06590)	-	1153358..1154785 (+)	1428	WP_000863185.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
FK544_RS06605 (FK544_06595)	-	1154796..1155032 (+)	237	WP_000562976.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
FK544_RS06610 (FK544_06600)	ygbN	1155070..1156434 (-)	1365	WP_000104432.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=325362 FK544_RS06585 WP_000081550.1 1151098..1152090(+) (rpoS) [Escherichia coli strain MSHS 133]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=325362 FK544_RS06585 WP_000081550.1 1151098..1152090(+) (rpoS) [Escherichia coli strain MSHS 133]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715