Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   EGX77_RS14050 Genome accession   NZ_CP033738
Coordinates   2785772..2787463 (-) Length   563 a.a.
NCBI ID   WP_070031780.1    Uniprot ID   -
Organism   Listeria monocytogenes strain FDAARGOS_554     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2780772..2792463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX77_RS14030 (EGX77_14030) - 2781110..2782105 (-) 996 WP_003738888.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  EGX77_RS14035 (EGX77_14035) lpdA 2782130..2783557 (-) 1428 WP_070214999.1 dihydrolipoyl dehydrogenase -
  EGX77_RS14040 (EGX77_14040) buk 2783572..2784639 (-) 1068 WP_069008825.1 butyrate kinase -
  EGX77_RS14045 (EGX77_14045) - 2784776..2785642 (-) 867 WP_003729889.1 phosphate acyltransferase -
  EGX77_RS14050 (EGX77_14050) recN 2785772..2787463 (-) 1692 WP_070031780.1 DNA repair protein RecN Machinery gene
  EGX77_RS14055 (EGX77_14055) ahrC 2787486..2787935 (-) 450 WP_003722493.1 transcriptional regulator AhrC/ArgR -
  EGX77_RS14060 (EGX77_14060) - 2788126..2788950 (-) 825 WP_003729890.1 TlyA family RNA methyltransferase -
  EGX77_RS14065 (EGX77_14065) dxs 2788947..2790866 (-) 1920 WP_123810840.1 1-deoxy-D-xylulose-5-phosphate synthase -
  EGX77_RS14070 (EGX77_14070) - 2791033..2791233 (-) 201 WP_003719639.1 cold-shock protein -
  EGX77_RS14075 (EGX77_14075) - 2791432..2792313 (-) 882 WP_123810824.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63544.30 Da        Isoelectric Point: 5.0693

>NTDB_id=325304 EGX77_RS14050 WP_070031780.1 2785772..2787463(-) (recN) [Listeria monocytogenes strain FDAARGOS_554]
MLQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRGSADFIRYGEERLELQGLFALAEDNLACRNA
LIENGIDASDDMVVLERSLFRSGKNSCRINGKLVTTVLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKPAL
TKYQTNFKEYQTIEKEWQNWTKNERELAQRLDMLRFQQQEIENANLQAGEEDRLLEQKNILANFEKLNENLQGAYAAIQG
EPGGLEFVGEAMRQMEAAASIHTDYKAVSEAISSSYYMLEDSMSQIRQSLDQLEFQPEELNQIESRLNDLNQLKRKYGKT
IEDIIQYEQEISSEMEKLTDSESHVGHLETKLATLKAELTKQANTLTEIRKKAAVTLEKQIKQELNHLYMEKAIFSVRFE
ANKMELTDSGQDSVVFYMSTNPGEPLKPLAKIASGGELSRMMLALKTIFSRHQGITSIIFDEVDTGVSGRVGQAIAEKIY
AVSVGSQVLCISHLPQVAAMANHHYYITKKVQNKRTTTSVTVLKGEEKVEEISRMIAGIEVTELTKQHAKEMIEQAEKVK
QTY

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=325304 EGX77_RS14050 WP_070031780.1 2785772..2787463(-) (recN) [Listeria monocytogenes strain FDAARGOS_554]
TTGCTTCAAGAAATGACAATTAAAAACTTTGCTATCATCGAATCGCTTTCTTTAACTTTTCAAGAAGGGATGACGGTACT
TACGGGGGAGACCGGCGCTGGTAAATCAATTATTATTGATGCGCTTGGTCTTCTTGTTGGCGGACGCGGATCAGCTGATT
TTATCCGTTATGGAGAAGAGCGTTTAGAACTTCAAGGGCTTTTTGCGCTAGCAGAGGATAACCTTGCTTGCCGAAATGCG
TTAATTGAAAATGGGATAGATGCTTCGGATGATATGGTTGTACTAGAACGCAGCCTGTTTCGCTCGGGGAAAAATAGTTG
CCGAATTAATGGCAAGCTTGTAACTACAGTTCTCTTGCGCCAAATTGGCTCGAAATTAATAGATATCCATAGTCAGCATG
AACATCAGGAATTGATGAATGAGGAGTTTCATTTGTCATTACTTGATCGTTTCGCTTCTGACAAAATCAAGCCAGCACTA
ACCAAGTACCAAACTAATTTCAAAGAATATCAAACAATTGAGAAAGAGTGGCAAAATTGGACAAAAAATGAGCGAGAATT
AGCACAACGTCTGGATATGCTCCGTTTTCAACAACAGGAAATTGAAAATGCCAATTTGCAAGCTGGTGAAGAAGATCGCT
TGTTAGAACAAAAAAATATCTTAGCCAATTTTGAAAAACTTAACGAAAATTTACAAGGAGCTTATGCCGCGATTCAAGGT
GAGCCTGGTGGGCTGGAATTTGTTGGAGAAGCAATGCGCCAAATGGAAGCAGCGGCGAGTATTCATACGGATTATAAAGC
GGTTAGCGAGGCCATTTCTTCTAGTTACTATATGTTAGAAGATAGCATGAGTCAAATTAGGCAATCACTGGATCAGCTCG
AATTCCAACCAGAAGAGCTGAATCAAATTGAATCACGTTTGAATGATTTAAACCAATTAAAACGCAAATATGGCAAAACC
ATTGAAGATATCATTCAATACGAACAAGAAATAAGCAGCGAAATGGAAAAACTGACAGATAGTGAATCACATGTCGGGCA
TTTAGAGACCAAATTAGCAACACTAAAAGCAGAACTAACAAAACAGGCGAATACACTAACGGAAATCCGTAAAAAAGCGG
CTGTTACGTTAGAAAAGCAAATCAAACAAGAATTAAATCATTTATATATGGAGAAAGCCATTTTTAGTGTACGCTTTGAA
GCAAATAAAATGGAACTAACAGATTCAGGGCAAGATAGCGTCGTTTTCTATATGTCAACAAACCCGGGTGAACCTTTAAA
ACCATTAGCAAAAATCGCTTCTGGTGGAGAGTTATCTAGAATGATGTTAGCATTAAAAACCATTTTTTCTAGGCACCAAG
GTATCACCTCGATTATTTTCGATGAAGTAGATACTGGTGTAAGTGGTCGCGTTGGTCAAGCGATTGCAGAAAAAATTTAT
GCTGTTTCAGTTGGCTCGCAAGTCCTATGCATTAGCCATTTGCCTCAAGTTGCAGCAATGGCGAACCACCACTACTACAT
TACGAAAAAAGTCCAAAACAAACGGACAACAACTTCCGTTACAGTGCTTAAAGGAGAAGAGAAAGTAGAAGAAATCAGTC
GAATGATTGCTGGAATAGAAGTCACCGAATTAACCAAACAACATGCAAAAGAAATGATTGAACAAGCGGAAAAAGTAAAA
CAAACGTATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.431

100

0.536

Multiple sequence alignment