Detailed information NTG0325283

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FK543_RS06080
• Genome accession: NZ_CP041302
• Coordinates: 1039827..1040819 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MSHS 472
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1034827..1045819

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FK543_RS06050 (FK543_06050)	ispD	1034888..1035598 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FK543_RS06055 (FK543_06055)	ispF	1035598..1036077 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FK543_RS06060 (FK543_06060)	truD	1036074..1037123 (+)	1050	WP_000568921.1	tRNA pseudouridine(13) synthase TruD	-
FK543_RS06065 (FK543_06065)	surE	1037104..1037865 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
FK543_RS06070 (FK543_06070)	pcm	1037859..1038485 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FK543_RS06075 (FK543_06075)	nlpD	1038670..1039764 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
FK543_RS06080 (FK543_06080)	rpoS	1039827..1040819 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
FK543_RS06085 (FK543_06085)	-	1040940..1041347 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
FK543_RS06090 (FK543_06090)	-	1041494..1042087 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
FK543_RS06095 (FK543_06095)	-	1042087..1043514 (+)	1428	WP_000863235.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
FK543_RS06100 (FK543_06100)	-	1043525..1043761 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
FK543_RS06105 (FK543_06105)	ygbN	1043799..1045163 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=325283 FK543_RS06080 WP_000081550.1 1039827..1040819(+) (rpoS) [Escherichia coli strain MSHS 472]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=325283 FK543_RS06080 WP_000081550.1 1039827..1040819(+) (rpoS) [Escherichia coli strain MSHS 472]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715