Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EGX77_RS05325 Genome accession   NZ_CP033738
Coordinates   1030253..1031626 (-) Length   457 a.a.
NCBI ID   WP_003729197.1    Uniprot ID   A0A0E0USD9
Organism   Listeria monocytogenes strain FDAARGOS_554     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1025253..1036626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX77_RS05300 (EGX77_05300) epsC 1025354..1025968 (-) 615 WP_003732828.1 serine O-acetyltransferase EpsC -
  EGX77_RS05305 (EGX77_05305) gltX 1026368..1027843 (-) 1476 WP_003729193.1 glutamate--tRNA ligase -
  EGX77_RS05310 (EGX77_05310) ispF 1027862..1028335 (-) 474 WP_003740385.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  EGX77_RS05315 (EGX77_05315) ispD 1028328..1029026 (-) 699 WP_070032136.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  EGX77_RS05320 (EGX77_05320) - 1029046..1030119 (-) 1074 WP_069009920.1 PIN/TRAM domain-containing protein -
  EGX77_RS05325 (EGX77_05325) radA 1030253..1031626 (-) 1374 WP_003729197.1 DNA repair protein RadA Machinery gene
  EGX77_RS05330 (EGX77_05330) - 1031773..1034235 (-) 2463 WP_003729198.1 ATP-dependent Clp protease ATP-binding subunit -
  EGX77_RS05335 (EGX77_05335) - 1034264..1035286 (-) 1023 WP_003729199.1 protein arginine kinase -
  EGX77_RS05340 (EGX77_05340) - 1035283..1035801 (-) 519 WP_070032137.1 UvrB/UvrC motif-containing protein -
  EGX77_RS05345 (EGX77_05345) - 1035814..1036272 (-) 459 WP_003723894.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50006.64 Da        Isoelectric Point: 7.6580

>NTDB_id=325274 EGX77_RS05325 WP_003729197.1 1030253..1031626(-) (radA) [Listeria monocytogenes strain FDAARGOS_554]
MAKAKRTTKFVCQACGYESAKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEPSKATPITQIESETEKRVETNMPELN
RVLGGGVVPGSMVLVGGDPGIGKSTLLLQVSAQLTLTNKKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQE
TIDFVKPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTAALMRIAKMQNIAIFIVGHVTKEGAIAGPRLLEHMVDTVLYFE
GERHHAYRILRAVKNRFGSTNEMGIFEMRDVGLVEVANPSEVFLEERLEGASGSTVVASMEGTRPVLVEIQALVSPTMFG
NAKRMATGIDYNKVSLIMAVLEKRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTG
EIRRVARIEQRVQEAAKLGFKRIFIPKNNEGTWKIPKDVQVVGVETIGEALKKALPD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=325274 EGX77_RS05325 WP_003729197.1 1030253..1031626(-) (radA) [Listeria monocytogenes strain FDAARGOS_554]
ATGGCTAAAGCAAAAAGGACAACCAAATTTGTGTGTCAGGCATGTGGATATGAATCGGCTAAATGGATGGGAAAATGTCC
GAATTGCAATGAGTGGAATCAGATGGTAGAAGCTTTGGAGCCATCAAAAAAATCGCGCTCAGCTTTTAATCATACGGGAG
AGCCTTCGAAAGCGACTCCGATTACTCAAATAGAAAGTGAAACAGAAAAACGTGTCGAAACCAATATGCCAGAGTTAAAT
AGAGTTCTTGGTGGAGGTGTGGTTCCAGGATCTATGGTACTTGTCGGCGGGGACCCTGGTATCGGGAAGTCGACTTTATT
ACTGCAAGTTTCAGCTCAACTGACGCTCACAAATAAAAAAGTATTGTATATATCAGGAGAAGAATCTATCAAACAAACGA
AGCTGCGGGCGGAACGCTTGCAAGTTTCGGGAGATAATTTATATGTGTATGCAGAAACAAATTTAGAAGCAGTTCAAGAA
ACGATTGATTTTGTGAAGCCTGATTTTGTAGTCATTGACTCTATTCAGACGGTTTATCATCCGGATGTTACGAGTGCAGC
AGGTAGTGTTTCGCAAGTTAGGGAATGTACAGCGGCATTGATGCGAATTGCTAAAATGCAAAACATTGCTATCTTTATTG
TTGGGCATGTAACGAAGGAAGGTGCTATTGCGGGACCGCGTCTGCTTGAACATATGGTTGATACTGTGCTTTATTTTGAA
GGGGAGCGTCATCATGCTTACCGGATTTTGCGTGCAGTGAAAAACCGTTTTGGTTCCACTAACGAAATGGGTATATTTGA
AATGCGAGATGTTGGACTAGTTGAAGTTGCTAATCCTTCCGAAGTGTTCTTGGAAGAACGCCTTGAAGGCGCTTCAGGCT
CAACGGTTGTAGCTTCTATGGAAGGAACTCGTCCAGTTCTTGTGGAAATTCAAGCGCTTGTTTCACCTACGATGTTTGGT
AATGCTAAGCGAATGGCGACAGGAATAGACTATAATAAAGTTTCGCTAATTATGGCTGTTTTAGAAAAAAGAGTAGGTTT
GATGCTACAAAACCAAGATGCTTACTTGAAAGCAGCGGGCGGGGTTAAGCTAGATGAACCAGCAGTGGATTTGGCGGTTG
CAGTGAGTGTGGCGTCTAGTTATCGTGATAAACCAACGAGAAGTACAGATTGTTTTATCGGAGAACTTGGACTTACGGGT
GAAATTCGTCGTGTAGCAAGAATTGAACAACGCGTACAAGAAGCAGCAAAACTTGGCTTTAAGCGAATTTTTATTCCGAA
AAACAATGAAGGTACTTGGAAAATACCAAAAGACGTGCAAGTGGTTGGCGTGGAAACGATTGGAGAAGCTTTGAAGAAGG
CTTTACCAGATTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)

AAA domain (AAA_25)

(63-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E0USD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

68.64

99.781

0.685
  radA Streptococcus pneumoniae Rx1

65.265

98.906

0.646
  radA Streptococcus pneumoniae D39

65.265

98.906

0.646
  radA Streptococcus pneumoniae R6

65.265

98.906

0.646
  radA Streptococcus pneumoniae TIGR4

65.265

98.906

0.646
  radA Streptococcus mitis NCTC 12261

65.265

98.906

0.646
  radA Streptococcus mitis SK321

65.044

98.906

0.643

Multiple sequence alignment