Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FK541_RS19285 Genome accession   NZ_CP041300
Coordinates   3748282..3748887 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli O1:H42 strain CLSC36     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3743282..3753887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FK541_RS19265 (FK541_19270) aes 3743423..3744382 (+) 960 WP_001357009.1 acetyl esterase -
  FK541_RS19270 (FK541_19275) hemH 3744379..3745341 (-) 963 WP_001250117.1 ferrochelatase -
  FK541_RS19275 (FK541_19280) adk 3745473..3746117 (-) 645 WP_001220233.1 adenylate kinase -
  FK541_RS19280 (FK541_19285) htpG 3746298..3748172 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  FK541_RS19285 (FK541_19290) recR 3748282..3748887 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  FK541_RS19290 (FK541_19295) ybaB 3748887..3749216 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  FK541_RS19295 (FK541_19300) dnaX 3749269..3751200 (-) 1932 WP_022645284.1 DNA polymerase III subunit gamma/tau -
  FK541_RS19300 (FK541_19305) apt 3751329..3751880 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  FK541_RS19305 (FK541_19310) ybaN 3752033..3752410 (-) 378 WP_022645283.1 DUF454 family protein -
  FK541_RS19310 (FK541_19315) priC 3752480..3753007 (+) 528 WP_022645282.1 primosomal replication protein N'' -
  FK541_RS19315 (FK541_19320) rsmS 3753021..3753185 (+) 165 WP_000051144.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=325237 FK541_RS19285 WP_001195025.1 3748282..3748887(-) (recR) [Escherichia coli O1:H42 strain CLSC36]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=325237 FK541_RS19285 WP_001195025.1 3748282..3748887(-) (recR) [Escherichia coli O1:H42 strain CLSC36]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCACCTGTCGCCGCTGGACGGCATCGGTCCGGATGACATCGGCCTTGATCGCCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACATTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443