Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | CAGG_RS16170 | Genome accession | NC_011831 |
| Coordinates | 3943754..3945151 (-) | Length | 465 a.a. |
| NCBI ID | WP_015941960.1 | Uniprot ID | B8G859 |
| Organism | Chloroflexus aggregans DSM 9485 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 3938754..3950151
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CAGG_RS16150 (Cagg_3251) | - | 3941137..3941715 (-) | 579 | WP_015941956.1 | SpoIIE family protein phosphatase | - |
| CAGG_RS16155 (Cagg_3252) | - | 3941725..3942135 (-) | 411 | WP_041470661.1 | anti-sigma regulatory factor | - |
| CAGG_RS16160 (Cagg_3253) | dtd | 3942183..3942650 (-) | 468 | WP_015941958.1 | D-aminoacyl-tRNA deacylase | - |
| CAGG_RS16165 (Cagg_3254) | - | 3942650..3943750 (-) | 1101 | WP_015941959.1 | PIN/TRAM domain-containing protein | - |
| CAGG_RS16170 (Cagg_3255) | radA | 3943754..3945151 (-) | 1398 | WP_015941960.1 | DNA repair protein RadA | Machinery gene |
| CAGG_RS19350 (Cagg_3256) | - | 3945235..3948312 (-) | 3078 | WP_015941961.1 | O-antigen ligase family protein | - |
Sequence
Protein
Download Length: 465 a.a. Molecular weight: 50176.70 Da Isoelectric Point: 7.4583
>NTDB_id=32523 CAGG_RS16170 WP_015941960.1 3943754..3945151(-) (radA) [Chloroflexus aggregans DSM 9485]
MAKTRTIFVCQQCGAQQSRWMGRCPECGAWDSLVEQLIAPARATGTGRPTALGQNQPTRLRDIPLADFQRLPVYAEEFAR
VLGGGLVPGSVVLIGGDPGVGKSTLLGQVAAHFAASVGPALYVSAEESAQQIRMRAERLGLTADDLFILAETSLDLIIEH
IRTLRPRLVIVDSIQTVYLPELTSAAGSVSQVREGALRLMQLAKETAIPIVLVGHVTKEGAIAGPRVLEHIVDVVLYLEG
DRFHQFRLLRGVKNRFGSTNEVGVFEMAGDGLREVRNPSQVFLAERNTHSPGSTVAVTLEGTRPLLVEVQALTSHTANAQ
PRRTTNGFDLNRLLMLTAVLMKRVGLPLFNQDLYVNIVGGLRIGEPAADLAVTLAIASSYRNQRIDPDVVCLGEVGLSGE
LRSVSQIDRRLSEAAKLGFRHAVVPAHTTLEPPPGLTITPVRSLTEAVELLTRKPNASQTETDQG
MAKTRTIFVCQQCGAQQSRWMGRCPECGAWDSLVEQLIAPARATGTGRPTALGQNQPTRLRDIPLADFQRLPVYAEEFAR
VLGGGLVPGSVVLIGGDPGVGKSTLLGQVAAHFAASVGPALYVSAEESAQQIRMRAERLGLTADDLFILAETSLDLIIEH
IRTLRPRLVIVDSIQTVYLPELTSAAGSVSQVREGALRLMQLAKETAIPIVLVGHVTKEGAIAGPRVLEHIVDVVLYLEG
DRFHQFRLLRGVKNRFGSTNEVGVFEMAGDGLREVRNPSQVFLAERNTHSPGSTVAVTLEGTRPLLVEVQALTSHTANAQ
PRRTTNGFDLNRLLMLTAVLMKRVGLPLFNQDLYVNIVGGLRIGEPAADLAVTLAIASSYRNQRIDPDVVCLGEVGLSGE
LRSVSQIDRRLSEAAKLGFRHAVVPAHTTLEPPPGLTITPVRSLTEAVELLTRKPNASQTETDQG
Nucleotide
Download Length: 1398 bp
>NTDB_id=32523 CAGG_RS16170 WP_015941960.1 3943754..3945151(-) (radA) [Chloroflexus aggregans DSM 9485]
ATGGCAAAAACACGTACTATCTTCGTCTGTCAACAATGTGGTGCTCAGCAGAGTCGCTGGATGGGCAGATGCCCAGAATG
CGGTGCATGGGATAGTTTAGTTGAGCAATTGATCGCTCCTGCTCGCGCAACCGGTACCGGTCGCCCGACTGCTCTCGGCC
AGAACCAACCCACGCGCCTACGCGATATTCCACTGGCCGATTTTCAACGATTACCTGTTTATGCTGAAGAGTTCGCCCGC
GTCCTCGGTGGCGGGTTAGTTCCCGGTTCAGTCGTCTTGATCGGCGGTGATCCCGGTGTTGGAAAATCAACGTTACTCGG
CCAAGTGGCCGCCCATTTTGCTGCCAGCGTTGGCCCGGCCCTGTACGTCAGCGCCGAAGAGTCGGCTCAACAGATTCGTA
TGCGTGCCGAACGACTTGGCCTTACCGCCGATGACCTCTTCATATTGGCCGAAACGTCACTCGATTTGATTATCGAGCAC
ATCCGTACCCTGCGCCCACGTCTGGTGATCGTCGACTCGATCCAGACCGTTTACCTGCCAGAATTGACGAGCGCTGCCGG
GAGTGTCTCGCAAGTCCGCGAAGGTGCGCTGCGCCTGATGCAACTGGCGAAAGAGACGGCAATTCCGATAGTGTTAGTCG
GTCATGTTACCAAAGAAGGGGCAATTGCCGGCCCGCGCGTACTGGAGCATATTGTCGATGTAGTGCTCTACCTCGAAGGT
GATCGATTTCACCAATTTCGTCTCTTGCGCGGCGTGAAGAATCGCTTCGGGAGCACCAACGAGGTTGGCGTGTTTGAAAT
GGCCGGTGATGGGTTGCGCGAAGTACGCAACCCATCACAAGTCTTTCTTGCCGAACGCAACACCCACAGTCCCGGCTCCA
CCGTCGCCGTGACCCTCGAAGGGACCCGCCCGTTGCTGGTTGAAGTGCAGGCCCTAACCTCTCATACAGCTAATGCCCAA
CCTCGCCGCACGACCAATGGCTTTGACCTGAACCGCTTGCTGATGCTGACCGCCGTGTTGATGAAGCGGGTTGGCTTACC
GCTGTTTAATCAAGACCTGTACGTCAATATTGTCGGTGGACTACGGATCGGTGAACCGGCTGCCGATCTTGCCGTGACAT
TGGCAATTGCCTCGTCGTACCGCAATCAGCGCATCGACCCCGACGTGGTCTGTCTTGGTGAAGTTGGTCTATCGGGAGAA
TTGCGTAGCGTGAGCCAGATCGATCGTCGCCTCAGCGAAGCGGCGAAACTCGGCTTTCGCCACGCAGTGGTACCGGCCCA
TACGACGCTCGAACCCCCCCCCGGTTTGACAATCACGCCGGTGCGGTCGCTGACTGAAGCTGTTGAACTCCTCACCCGCA
AACCTAACGCATCGCAGACTGAAACCGATCAAGGGTGA
ATGGCAAAAACACGTACTATCTTCGTCTGTCAACAATGTGGTGCTCAGCAGAGTCGCTGGATGGGCAGATGCCCAGAATG
CGGTGCATGGGATAGTTTAGTTGAGCAATTGATCGCTCCTGCTCGCGCAACCGGTACCGGTCGCCCGACTGCTCTCGGCC
AGAACCAACCCACGCGCCTACGCGATATTCCACTGGCCGATTTTCAACGATTACCTGTTTATGCTGAAGAGTTCGCCCGC
GTCCTCGGTGGCGGGTTAGTTCCCGGTTCAGTCGTCTTGATCGGCGGTGATCCCGGTGTTGGAAAATCAACGTTACTCGG
CCAAGTGGCCGCCCATTTTGCTGCCAGCGTTGGCCCGGCCCTGTACGTCAGCGCCGAAGAGTCGGCTCAACAGATTCGTA
TGCGTGCCGAACGACTTGGCCTTACCGCCGATGACCTCTTCATATTGGCCGAAACGTCACTCGATTTGATTATCGAGCAC
ATCCGTACCCTGCGCCCACGTCTGGTGATCGTCGACTCGATCCAGACCGTTTACCTGCCAGAATTGACGAGCGCTGCCGG
GAGTGTCTCGCAAGTCCGCGAAGGTGCGCTGCGCCTGATGCAACTGGCGAAAGAGACGGCAATTCCGATAGTGTTAGTCG
GTCATGTTACCAAAGAAGGGGCAATTGCCGGCCCGCGCGTACTGGAGCATATTGTCGATGTAGTGCTCTACCTCGAAGGT
GATCGATTTCACCAATTTCGTCTCTTGCGCGGCGTGAAGAATCGCTTCGGGAGCACCAACGAGGTTGGCGTGTTTGAAAT
GGCCGGTGATGGGTTGCGCGAAGTACGCAACCCATCACAAGTCTTTCTTGCCGAACGCAACACCCACAGTCCCGGCTCCA
CCGTCGCCGTGACCCTCGAAGGGACCCGCCCGTTGCTGGTTGAAGTGCAGGCCCTAACCTCTCATACAGCTAATGCCCAA
CCTCGCCGCACGACCAATGGCTTTGACCTGAACCGCTTGCTGATGCTGACCGCCGTGTTGATGAAGCGGGTTGGCTTACC
GCTGTTTAATCAAGACCTGTACGTCAATATTGTCGGTGGACTACGGATCGGTGAACCGGCTGCCGATCTTGCCGTGACAT
TGGCAATTGCCTCGTCGTACCGCAATCAGCGCATCGACCCCGACGTGGTCTGTCTTGGTGAAGTTGGTCTATCGGGAGAA
TTGCGTAGCGTGAGCCAGATCGATCGTCGCCTCAGCGAAGCGGCGAAACTCGGCTTTCGCCACGCAGTGGTACCGGCCCA
TACGACGCTCGAACCCCCCCCCGGTTTGACAATCACGCCGGTGCGGTCGCTGACTGAAGCTGTTGAACTCCTCACCCGCA
AACCTAACGCATCGCAGACTGAAACCGATCAAGGGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Bacillus subtilis subsp. subtilis str. 168 |
51.549 |
97.204 |
0.501 |
| radA | Streptococcus mitis NCTC 12261 |
51.209 |
97.849 |
0.501 |
| radA | Streptococcus mitis SK321 |
51.209 |
97.849 |
0.501 |
| radA | Streptococcus pneumoniae Rx1 |
50.989 |
97.849 |
0.499 |
| radA | Streptococcus pneumoniae D39 |
50.989 |
97.849 |
0.499 |
| radA | Streptococcus pneumoniae R6 |
50.989 |
97.849 |
0.499 |
| radA | Streptococcus pneumoniae TIGR4 |
50.989 |
97.849 |
0.499 |