Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   EGX68_RS08650 Genome accession   NZ_CP033735
Coordinates   1678732..1679448 (+) Length   238 a.a.
NCBI ID   WP_019469554.1    Uniprot ID   -
Organism   Staphylococcus cohnii strain FDAARGOS_538     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1673732..1684448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX68_RS08625 (EGX68_08630) - 1674309..1674938 (+) 630 WP_019469559.1 nitroreductase family protein -
  EGX68_RS08630 (EGX68_08635) - 1675165..1675950 (+) 786 WP_019469558.1 carbon-nitrogen family hydrolase -
  EGX68_RS08635 (EGX68_08640) - 1676688..1677257 (+) 570 WP_019469557.1 accessory gene regulator AgrB -
  EGX68_RS08640 (EGX68_08645) agrD 1677260..1677397 (+) 138 WP_019469556.1 cyclic lactone autoinducer peptide AgrD -
  EGX68_RS08645 (EGX68_08650) agrC 1677424..1678719 (+) 1296 WP_040029797.1 quorum-sensing sensor histidine kinase AgrC -
  EGX68_RS08650 (EGX68_08655) agrA 1678732..1679448 (+) 717 WP_019469554.1 quorum-sensing response regulator AgrA Regulator
  EGX68_RS08655 (EGX68_08660) - 1679641..1680606 (-) 966 WP_019469553.1 carbohydrate kinase -
  EGX68_RS08660 (EGX68_08665) - 1680607..1682088 (-) 1482 WP_103211108.1 sucrose-6-phosphate hydrolase -
  EGX68_RS08665 (EGX68_08670) - 1682882..1683106 (-) 225 WP_019469551.1 sulfurtransferase TusA family protein -
  EGX68_RS08670 (EGX68_08675) - 1683132..1684217 (-) 1086 WP_019469550.1 YeeE/YedE family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27995.81 Da        Isoelectric Point: 4.8826

>NTDB_id=325197 EGX68_RS08650 WP_019469554.1 1678732..1679448(+) (agrA) [Staphylococcus cohnii strain FDAARGOS_538]
MKIFICEDDVRQRENIVSIINNYIMIEEKPMEIEVATSDPYEVLERAKELKDIGCYFLDIQLEADINGIKLASEIRKYDP
VSNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPDELKSRVIDCLETSETRLKLLSKENTVETIELKRGSNSIYVQYDDVM
FFESSSNSHRLIAHLDNRQIEFYGNLKEIDNLDERFFRCHNSFVVNRHNIESIDSKSRIVYFKNNEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=325197 EGX68_RS08650 WP_019469554.1 1678732..1679448(+) (agrA) [Staphylococcus cohnii strain FDAARGOS_538]
ATGAAAATATTCATTTGTGAAGATGATGTAAGACAACGTGAAAATATAGTTTCAATTATCAATAATTACATCATGATAGA
AGAAAAGCCAATGGAAATTGAAGTAGCTACGTCAGATCCTTATGAGGTATTGGAACGTGCAAAAGAACTTAAAGATATTG
GTTGTTATTTTCTTGATATACAATTAGAAGCTGATATTAATGGCATTAAATTAGCAAGTGAGATTAGAAAATACGATCCA
GTGAGCAATATTATATTTGTCACAAGTCACAGTGAGCTCACTTATTTAACTTTTGTATATAAAGTTGCTGCTATGGATTT
TATTTTCAAAGATGATCCTGATGAATTAAAATCAAGAGTAATTGATTGTCTCGAAACATCAGAAACTCGATTGAAGCTAC
TTTCAAAAGAAAACACAGTTGAAACAATCGAACTCAAACGTGGCAGTAATTCTATTTATGTTCAATATGATGATGTAATG
TTCTTTGAATCTTCTTCGAATTCACATCGTTTGATTGCTCATTTAGATAATAGACAAATAGAATTTTATGGTAATTTAAA
AGAGATCGATAATTTAGATGAACGATTTTTTAGATGTCATAATAGTTTTGTTGTTAATAGACACAATATAGAATCCATTG
ATTCTAAGTCTCGTATTGTTTACTTCAAAAATAATGAACACTGCTACGCGTCCGTACGTAATGTCAAAAAAATTTAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

84.454

100

0.845

Multiple sequence alignment