Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EGX68_RS01325 Genome accession   NZ_CP033735
Coordinates   228334..229704 (+) Length   456 a.a.
NCBI ID   WP_019468584.1    Uniprot ID   -
Organism   Staphylococcus cohnii strain FDAARGOS_538     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 223334..234704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX68_RS01305 (EGX68_01305) - 223478..223939 (+) 462 WP_019468588.1 CtsR family transcriptional regulator -
  EGX68_RS01310 (EGX68_01310) - 223964..224515 (+) 552 WP_019468587.1 UvrB/UvrC motif-containing protein -
  EGX68_RS01315 (EGX68_01315) - 224508..225518 (+) 1011 WP_019468586.1 protein arginine kinase -
  EGX68_RS01320 (EGX68_01320) - 225530..227986 (+) 2457 WP_103211224.1 ATP-dependent Clp protease ATP-binding subunit -
  EGX68_RS01325 (EGX68_01325) radA 228334..229704 (+) 1371 WP_019468584.1 DNA repair protein RadA Machinery gene
  EGX68_RS01330 (EGX68_01330) - 229779..230837 (+) 1059 WP_103211223.1 PIN/TRAM domain-containing protein -
  EGX68_RS01335 (EGX68_01335) gltX 231277..232731 (+) 1455 WP_103211222.1 glutamate--tRNA ligase -
  EGX68_RS01340 (EGX68_01340) cysE 233086..233697 (+) 612 WP_229767956.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50377.86 Da        Isoelectric Point: 7.2493

>NTDB_id=325173 EGX68_RS01325 WP_019468584.1 228334..229704(+) (radA) [Staphylococcus cohnii strain FDAARGOS_538]
MAKKKVVFECMACGYQSPKWMGKCPNCGGWNQMEEIIEQKTTSPKHGVRSRENTAKVQKLNDIKHETTPRIKTNSAEFNR
VLGGGIVNGSLVLIGGDPGIGKSTLLLQICAALSQDKNVLYITGEESLNQTKLRADRLDEDSSNLNVFAETDLEVIHETV
KQLKPDLLVVDSIQTIFHPEISSAPGSVSQVRESTQSLMNIAKQLNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
EHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVKNPSEMFLEERSTNVPGSTIVSTMEGTRPLLIEVQALVTPTTFNNP
RRMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLGIIVATASSFKDLTVDGLDCFIGEVGLTGEV
RRVSRIEQRVQEAEKLGFKRIIIPESNIGGWEFPSNIKVIGVTNVHEALKYALTKH

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=325173 EGX68_RS01325 WP_019468584.1 228334..229704(+) (radA) [Staphylococcus cohnii strain FDAARGOS_538]
TTGGCCAAAAAGAAAGTGGTTTTTGAATGTATGGCGTGTGGTTACCAGTCGCCTAAATGGATGGGGAAATGTCCTAACTG
TGGTGGATGGAATCAAATGGAAGAAATAATAGAACAGAAAACGACAAGCCCGAAACATGGTGTGCGTAGTCGCGAAAATA
CTGCCAAAGTACAGAAGTTAAATGATATTAAGCATGAGACAACACCACGTATTAAAACGAATTCAGCAGAATTTAATCGA
GTACTTGGTGGCGGGATTGTAAATGGTTCGCTTGTATTAATTGGTGGTGATCCAGGTATCGGTAAATCAACACTATTATT
ACAAATATGTGCTGCATTATCACAAGATAAAAATGTTTTATATATAACTGGTGAAGAATCATTAAACCAAACAAAATTAA
GAGCGGATCGATTAGATGAAGACTCAAGTAATTTAAATGTATTTGCAGAAACAGATTTAGAAGTGATACATGAGACAGTT
AAACAATTGAAGCCTGATTTACTTGTTGTAGATTCTATACAGACCATTTTTCACCCTGAAATCAGTTCTGCACCCGGTTC
GGTTTCTCAGGTGAGGGAGAGTACACAAAGCTTGATGAATATAGCTAAACAACTAAATATTGCCACTTTTATTGTTGGTC
ATGTAACGAAAGAAGGTCAGATTGCAGGGCCTCGTCTGTTAGAACATATGGTAGATACGGTACTTTATTTTGAAGGTGAT
GAACATCATGCATATCGTATTTTAAGAGCAGTGAAAAACCGTTTTGGCTCTACGAATGAAATGGGTATTTTTGAAATGAA
ACAGAGTGGATTGAAAGGTGTTAAAAACCCTTCAGAAATGTTTTTAGAAGAACGTTCTACAAATGTTCCAGGTTCGACAA
TCGTGTCTACTATGGAAGGTACAAGACCGTTATTAATTGAAGTTCAAGCCTTAGTAACGCCAACAACCTTTAATAACCCT
AGACGTATGGCTACAGGAATAGATCACAATCGTTTGAGTTTGTTGATGGCTGTATTAGAGAAAAAAGAGAATTATTTACT
GCAACAACAAGATGCTTATATTAAAGTAGCTGGTGGCGTAAGATTAACAGAACCTGCTGTCGATTTAGGAATCATTGTTG
CTACAGCCTCAAGTTTTAAAGATTTAACTGTAGACGGGTTAGATTGTTTTATTGGTGAGGTTGGTTTAACCGGAGAAGTG
AGACGTGTTTCACGCATTGAACAACGTGTACAAGAAGCGGAAAAACTAGGTTTTAAACGCATTATTATTCCTGAATCTAA
TATTGGGGGCTGGGAATTTCCTAGCAATATCAAAGTCATTGGTGTGACAAATGTGCACGAAGCATTAAAATATGCTTTAA
CCAAACATTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(360-427)

AAA domain (AAA_25)

(66-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

64.912

100

0.649
  radA Streptococcus pneumoniae Rx1

59.778

98.684

0.59
  radA Streptococcus pneumoniae D39

59.778

98.684

0.59
  radA Streptococcus pneumoniae R6

59.778

98.684

0.59
  radA Streptococcus pneumoniae TIGR4

59.778

98.684

0.59
  radA Streptococcus mitis NCTC 12261

59.778

98.684

0.59
  radA Streptococcus mitis SK321

59.778

98.684

0.59

Multiple sequence alignment