Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   CVO_RS07690 Genome accession   NZ_CP033720
Coordinates   1530303..1532105 (+) Length   600 a.a.
NCBI ID   WP_159571338.1    Uniprot ID   -
Organism   Sulfurimonas sp. CVO     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1525303..1537105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVO_RS07665 (CVO_07650) - 1525899..1526537 (-) 639 WP_159571329.1 uroporphyrinogen-III synthase -
  CVO_RS07670 (CVO_07655) guaA 1526550..1528100 (-) 1551 WP_159571332.1 glutamine-hydrolyzing GMP synthase -
  CVO_RS07675 (CVO_07660) nadB 1528260..1529708 (-) 1449 WP_159571335.1 L-aspartate oxidase -
  CVO_RS07680 (CVO_07665) - 1529705..1529893 (-) 189 WP_188093771.1 hypothetical protein -
  CVO_RS07685 (CVO_07670) - 1529951..1530313 (+) 363 WP_241690956.1 hypothetical protein -
  CVO_RS07690 (CVO_07675) uvrC 1530303..1532105 (+) 1803 WP_159571338.1 excinuclease ABC subunit UvrC Machinery gene
  CVO_RS07695 (CVO_07680) - 1532166..1533662 (+) 1497 WP_159571341.1 Hpt domain-containing protein -
  CVO_RS07700 (CVO_07685) - 1533662..1536757 (+) 3096 WP_159571344.1 ATP-binding protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69092.98 Da        Isoelectric Point: 9.4947

>NTDB_id=325106 CVO_RS07690 WP_159571338.1 1530303..1532105(+) (uvrC) [Sulfurimonas sp. CVO]
MNLEETIKQLPDCAGIYQYFDEEGHLLYVGKAKSLAKRVKSYFIFTPSLKPNTNLSSRIKKMISQAVSMNYIVVNSEHDA
LILENSLIKQLNPKYNILLRDDKTYPYIYIDNAKEYPRFEITRKIIQSSDITYYGPFSVGARDILDSIYDICRLVQKKGS
LKSKKLCLYYQIGKCLGPCELNVPYEEYKKELDLATELIKNKKTLLAKLEEKMHFYAQNLRFEEAGEIRDRYQRISRSEI
KSEIDFASDENYDIFVLKNAENRAVIVRIFMRGGKIISSSHDYIQLNEGYDEDELYQRALMDFYSNGKPPIIAPILIATE
FENKNIIEEYLTTLFEKKALIKVPKKGDKKKLIDLALINAQELLRKEGKQNSDAILSEVKELLSLEKIPKRVEIFDNSHM
SGVATVGAMAVYDKGGFDKKSYRTYHLQAKDEYSQMRETLTKRVESFSKNSPPDLWIIDGGGTLLKLAFEILESNGVFLD
VIAISKEKIDAKAHRAKGKAKDIIHTKEDVFRLKDSDKRLQWMQKLRDEAHRSAINFHKKTKLKLDKESKLLSLKGISQA
KIVKLINHFGTFEALKNLSVEEIGSVLNIKDANIIKSIYK

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=325106 CVO_RS07690 WP_159571338.1 1530303..1532105(+) (uvrC) [Sulfurimonas sp. CVO]
ATGAATCTTGAAGAAACTATAAAACAACTGCCCGATTGTGCCGGAATATACCAATATTTTGATGAAGAGGGACATCTTCT
TTATGTAGGCAAAGCAAAAAGTTTAGCAAAAAGAGTAAAAAGTTATTTTATTTTCACCCCTTCTCTAAAGCCAAACACAA
ATCTCTCAAGCAGAATCAAAAAGATGATTTCTCAAGCAGTTTCTATGAACTACATAGTTGTAAATTCAGAGCATGACGCT
TTAATTTTAGAAAATTCACTTATCAAACAGCTTAATCCCAAATATAATATTTTACTAAGAGATGACAAAACTTACCCCTA
TATTTACATAGACAACGCAAAAGAGTATCCAAGATTTGAAATAACAAGAAAAATCATACAATCTTCAGATATTACATATT
ATGGTCCCTTTTCCGTCGGTGCAAGAGATATCTTAGACTCAATTTATGATATATGCCGTCTTGTACAGAAAAAAGGATCT
CTAAAATCAAAAAAACTCTGCCTTTACTATCAAATAGGCAAATGTCTTGGACCATGTGAATTAAATGTTCCATATGAAGA
GTATAAAAAAGAGCTTGATTTGGCTACAGAGCTGATAAAAAACAAGAAAACACTTCTGGCAAAACTCGAAGAAAAGATGC
ACTTTTATGCCCAAAATCTTCGATTTGAAGAGGCAGGTGAAATTAGAGACAGATATCAAAGAATAAGCCGTTCAGAGATA
AAGAGTGAAATTGATTTTGCCAGTGATGAAAATTACGATATTTTTGTTCTAAAAAATGCTGAAAACAGAGCAGTAATAGT
AAGAATATTTATGAGAGGAGGCAAAATCATCTCATCTTCGCATGATTATATCCAGCTCAATGAAGGATATGATGAAGATG
AACTCTACCAAAGAGCTCTAATGGATTTTTACTCAAATGGAAAACCTCCGATTATAGCGCCGATACTGATTGCTACTGAA
TTTGAAAATAAAAATATCATAGAAGAGTATCTTACTACTCTCTTTGAGAAAAAAGCGCTTATAAAAGTACCTAAAAAGGG
GGATAAAAAGAAACTTATTGATTTGGCTTTGATAAATGCGCAGGAACTTTTAAGAAAAGAGGGCAAACAAAACAGCGATG
CAATCTTAAGTGAAGTAAAAGAGTTACTTTCTTTAGAAAAAATTCCTAAGCGCGTAGAGATTTTTGACAACTCTCATATG
TCAGGAGTTGCAACAGTCGGAGCTATGGCAGTATATGATAAAGGAGGTTTTGATAAAAAAAGTTACAGAACCTATCATCT
GCAGGCAAAAGACGAGTACTCTCAAATGAGAGAGACACTTACAAAAAGAGTAGAGAGCTTTTCCAAAAACTCTCCTCCAG
ATTTATGGATTATTGATGGAGGAGGCACACTCTTAAAACTTGCTTTTGAAATTTTAGAATCAAATGGAGTTTTTTTGGAT
GTCATCGCAATATCAAAAGAGAAGATAGATGCAAAAGCACATCGAGCAAAAGGAAAAGCAAAGGACATAATTCATACAAA
AGAGGATGTTTTTAGGCTTAAAGACAGCGATAAAAGACTTCAATGGATGCAAAAATTAAGAGATGAAGCACATAGAAGCG
CAATAAACTTTCATAAAAAAACAAAACTAAAACTTGATAAAGAGAGCAAACTCTTAAGCCTAAAAGGGATATCACAGGCA
AAAATAGTTAAACTAATAAACCATTTTGGAACATTTGAAGCGCTTAAGAACCTAAGTGTTGAGGAGATTGGTTCTGTTTT
AAACATAAAAGATGCAAATATAATAAAAAGTATTTATAAATAA

Domains

Predicted by InterproScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(380-535)

UvrB/uvrC motif (UVR)

(203-235)

GIY-YIG catalytic domain (GIY-YIG)

(14-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

50.51

98

0.495

Multiple sequence alignment