Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   FKM99_RS26100 Genome accession   NZ_CP041202
Coordinates   3444733..3446568 (-) Length   611 a.a.
NCBI ID   WP_141180504.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain Vb0624     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3439733..3451568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FKM99_RS26070 (FKM99_26075) trxA 3439994..3440320 (-) 327 WP_005458583.1 thioredoxin TrxA -
  FKM99_RS26075 (FKM99_26080) rhlB 3440432..3441745 (+) 1314 WP_005458582.1 ATP-dependent RNA helicase RhlB -
  FKM99_RS26080 (FKM99_26085) gppA 3441765..3443258 (+) 1494 WP_005480964.1 guanosine-5'-triphosphate,3'-diphosphate diphosphatase -
  FKM99_RS26085 (FKM99_26090) - 3443456..3444124 (-) 669 WP_005480953.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -
  FKM99_RS26095 (FKM99_26100) - 3444418..3444723 (-) 306 WP_005458579.1 DUF3630 family protein -
  FKM99_RS26100 (FKM99_26105) recQ 3444733..3446568 (-) 1836 WP_141180504.1 ATP-dependent DNA helicase RecQ Machinery gene
  FKM99_RS26105 (FKM99_26110) rarD 3446743..3447657 (+) 915 WP_141180505.1 EamA family transporter RarD -
  FKM99_RS26110 (FKM99_26115) - 3447732..3448529 (+) 798 WP_023650110.1 AraC family transcriptional regulator -
  FKM99_RS26115 (FKM99_26120) - 3448621..3449280 (+) 660 WP_025626938.1 LysE family translocator -
  FKM99_RS26120 (FKM99_26125) ggt 3449391..3451151 (+) 1761 WP_025626937.1 gamma-glutamyltransferase -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 69199.08 Da        Isoelectric Point: 6.8896

>NTDB_id=325099 FKM99_RS26100 WP_141180504.1 3444733..3446568(-) (recQ) [Vibrio parahaemolyticus strain Vb0624]
MTSTLLAEQSDSPVTPQRVLEEVFGYQTFRDGQQEVIESAVEGKDSLVIMPTGGGKSLCYQIPALVRSGITLVISPLISL
MKDQVDQLKANGVAADCVNSTMSREELLSVYNRMHSGQLKLVYVSPERVLMRDFIERLENLPLAMIAVDEAHCISQWGHD
FRPEYAALGQLKQHFSHVPFMALTATADDATRRDILERLRLHEPHVHLGSFDRPNIRYNLVEKHKPVSQIIRYLDTQKGN
CGIIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDDGPQKQVESHKLNAMSAFAEAQTCRRQVLLNYFGEYREKPC
GNCDICLDPPKHFDATEEARKALSCVYRVNQSFGMTYVVEVLRGMQNIRVREHGHDKISTYGIGRDHSHDYWVSIFRQLI
HKGLLFQNITRNSTLQLTEEARPLLRGDVSLELAVPRLDTAARAAKSDKLTSKNYDKKLFAKLRKLRKSIADEDGLPPYV
VFSDATLIDMAEILPTSYGEMLAVSGVGQRKLEKYADPFLDLIQEHITHHG

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=325099 FKM99_RS26100 WP_141180504.1 3444733..3446568(-) (recQ) [Vibrio parahaemolyticus strain Vb0624]
ATGACCTCAACTTTGTTAGCCGAACAATCAGACTCACCGGTAACGCCTCAACGTGTGTTGGAGGAAGTTTTCGGTTATCA
AACGTTTCGTGATGGCCAGCAAGAGGTCATCGAATCGGCGGTCGAGGGCAAAGACAGTCTGGTGATCATGCCGACAGGTG
GTGGCAAATCTCTTTGCTATCAGATACCTGCGTTGGTTCGTAGTGGCATCACCTTGGTGATTTCGCCGCTGATTTCTTTG
ATGAAAGACCAGGTCGATCAGCTCAAGGCTAACGGCGTTGCGGCAGACTGTGTGAACTCCACCATGAGCCGTGAAGAGCT
GCTGAGTGTGTATAACCGCATGCACAGCGGTCAACTCAAATTGGTTTACGTCTCACCAGAACGCGTGTTAATGCGTGACT
TCATCGAGCGCCTCGAAAATCTGCCTTTGGCGATGATTGCGGTGGATGAAGCGCACTGTATCTCACAGTGGGGACACGAT
TTCCGTCCTGAATACGCTGCGCTGGGTCAGTTAAAGCAGCATTTTTCGCATGTGCCATTTATGGCGCTCACCGCCACTGC
GGATGACGCTACACGTCGCGACATTCTTGAACGCTTACGTTTGCATGAACCTCATGTCCACTTAGGCAGTTTTGACCGTC
CGAATATCCGCTACAACCTGGTCGAGAAGCACAAGCCGGTTTCTCAGATCATTCGTTATCTCGACACCCAAAAGGGCAAT
TGCGGCATTATTTATTGTGGTAGCCGTAAGAAAGTCGAAATGGTGACGGAGAAGCTGTGCAACAACCACATCCGTGCGGC
GGGCTATCATGCAGGGATGGACGCTGATGAGCGTGCTTACGTTCAAGAGGCGTTTCAGCGGGATGACATTCAAATCGTGG
TCGCGACGGTTGCCTTTGGTATGGGTATTAACAAGCCGAACGTCCGTTTTGTGGTGCACTTTGATATTCCGCGCAATATT
GAATCCTACTACCAAGAAACGGGACGAGCAGGGCGAGATGGTTTGCCTGCTGAAGCGATGATGTTGTACGACCCTGCAGA
CATCAGTTGGCTACGTCGTATGCTGGATGAAAAAGACGATGGACCGCAAAAGCAAGTAGAAAGCCATAAACTTAATGCGA
TGAGTGCCTTTGCGGAAGCACAAACCTGTCGTCGTCAGGTTCTGCTCAACTACTTTGGTGAGTACCGCGAGAAGCCTTGT
GGTAACTGTGATATCTGCCTCGATCCACCCAAACATTTTGATGCGACAGAAGAAGCGCGAAAAGCGTTGTCGTGTGTTTA
CCGCGTTAACCAAAGCTTTGGTATGACGTATGTGGTTGAGGTGCTGCGTGGTATGCAAAATATCCGCGTGCGTGAACATG
GCCACGATAAGATCTCTACATACGGCATTGGCCGCGATCACAGCCATGATTACTGGGTGAGTATCTTCCGCCAGTTAATC
CACAAAGGACTGTTGTTTCAAAACATCACCCGAAACTCGACGTTGCAATTGACCGAGGAAGCTCGACCATTATTGCGCGG
GGATGTGTCGCTCGAGCTAGCGGTTCCTCGTTTGGATACCGCAGCACGCGCTGCGAAGTCGGACAAACTGACCAGCAAAA
ACTACGATAAGAAGCTGTTTGCGAAATTACGCAAGCTGCGTAAGTCGATTGCCGATGAGGATGGCTTACCACCATACGTT
GTATTTAGTGATGCGACCTTGATTGATATGGCGGAGATTCTGCCGACGTCGTATGGCGAAATGCTGGCGGTGAGCGGGGT
AGGTCAACGTAAATTAGAAAAATATGCCGATCCATTCTTGGATCTGATTCAAGAACACATCACTCACCACGGATAA

Domains

Predicted by InterProScan.

RQC domain (RQC)

(409-517)

HRDC domain (HRDC)

(537-603)

DEAD/DEAH box helicase (DEAD)

(31-189)

Helicase conserved C-terminal domain (Helicase_C)

(229-333)

RecQ zinc-binding (RecQ_Zn_bind)

(346-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

40.541

96.89

0.393