Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   FKM99_RS25815 Genome accession   NZ_CP041202
Coordinates   3395159..3396364 (-) Length   401 a.a.
NCBI ID   WP_141180497.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain Vb0624     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3390159..3401364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FKM99_RS25780 (FKM99_25785) - 3390344..3390754 (+) 411 WP_005460376.1 flagellar basal body-associated protein FliL -
  FKM99_RS25785 (FKM99_25790) glpG 3390814..3391656 (-) 843 WP_005496414.1 rhomboid family intramembrane serine protease GlpG -
  FKM99_RS25790 (FKM99_25795) glpE 3391656..3391976 (-) 321 WP_005460380.1 thiosulfate sulfurtransferase GlpE -
  FKM99_RS25800 (FKM99_25805) rpoH 3392468..3393328 (-) 861 WP_005490420.1 RNA polymerase sigma factor RpoH -
  FKM99_RS25805 (FKM99_25810) ftsX 3393504..3394472 (-) 969 WP_005481956.1 permease-like cell division protein FtsX -
  FKM99_RS25810 (FKM99_25815) ftsE 3394462..3395136 (-) 675 WP_005481953.1 cell division ATP-binding protein FtsE -
  FKM99_RS25815 (FKM99_25820) pilA 3395159..3396364 (-) 1206 WP_141180497.1 signal recognition particle-docking protein FtsY Machinery gene
  FKM99_RS25820 (FKM99_25825) rsmD 3396588..3397187 (+) 600 WP_025611361.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  FKM99_RS25825 (FKM99_25830) - 3397213..3397479 (+) 267 WP_005496405.1 DUF1145 domain-containing protein -
  FKM99_RS25830 (FKM99_25835) - 3397532..3398116 (-) 585 WP_005455144.1 YhgN family NAAT transporter -
  FKM99_RS25835 (FKM99_25840) - 3398236..3398457 (-) 222 WP_015297472.1 YecH family metal-binding protein -
  FKM99_RS25840 (FKM99_25845) - 3398527..3399147 (-) 621 WP_005481960.1 lysoplasmalogenase -
  FKM99_RS26980 - 3399881..3400060 (+) 180 WP_015297473.1 hypothetical protein -
  FKM99_RS25855 (FKM99_25860) - 3400123..3400491 (-) 369 WP_005489749.1 hypothetical protein -
  FKM99_RS25860 (FKM99_25865) - 3400733..3401062 (+) 330 WP_015297474.1 DUF2500 domain-containing protein -

Sequence

Protein


Download         Length: 401 a.a.        Molecular weight: 43696.32 Da        Isoelectric Point: 4.3371

>NTDB_id=325097 FKM99_RS25815 WP_141180497.1 3395159..3396364(-) (pilA) [Vibrio parahaemolyticus strain Vb0624]
MTEKKKRGLLSWLGFGDEEQSPKPKTEETVTEEAVEAPSEEQQTEEVAEQAQQTQELEQEPEKAEAAPAEAEAEAEAEAP
QVPVAPRIQEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTTTKIINNLTEKAS
RGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSSKTPYVILMVGVNGVGKTTTIGKLAKQFQSQGKKVMLAAGDTFRAAA
VEQLQVWGERNNVPVIAQHTGADSASVIYDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIM
LTLDAGTGQNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFSIPIRYIGVGEGIEDLRPFETQEFIDALFSRE
E

Nucleotide


Download         Length: 1206 bp        

>NTDB_id=325097 FKM99_RS25815 WP_141180497.1 3395159..3396364(-) (pilA) [Vibrio parahaemolyticus strain Vb0624]
ATGACGGAAAAAAAGAAGCGCGGATTACTTTCGTGGCTAGGTTTTGGTGACGAAGAACAAAGCCCAAAACCAAAAACTGA
AGAAACAGTAACAGAAGAAGCAGTGGAAGCGCCTTCTGAAGAACAGCAAACCGAAGAGGTTGCTGAGCAAGCGCAACAAA
CTCAAGAGCTTGAACAAGAGCCAGAAAAAGCTGAGGCTGCCCCAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCGCCA
CAAGTACCGGTTGCGCCTCGTATTCAAGAGCAAGAAAAGCCGACAGAAAGCTTCTTCGCTCGCCTTAAGCGCAGCCTTAG
CCGTACGAAAGCAAATATCGGCGCTGGTTTCTTTGGTCTGTTCAGCGGTAAAAAAATCGATGACGACCTATTTGAAGAGC
TAGAAGAGCAACTGCTCATTGCCGATGTGGGCATGGACACTACCACAAAAATCATCAACAACCTGACAGAAAAAGCCTCT
CGAGGTGATCTGAAAGATGGCGAAGCTCTTTATGGTCTGCTGAAAGAAGAAATGGCGGAGATTCTATCTAAAGTAGAACA
GCCTCTAGAGATCGACAGCAGCAAAACACCTTATGTCATCTTGATGGTTGGTGTGAATGGTGTGGGTAAAACCACCACCA
TCGGTAAACTTGCGAAGCAGTTCCAAAGCCAAGGCAAGAAAGTGATGTTAGCGGCTGGCGATACTTTCCGAGCGGCTGCA
GTTGAGCAGCTACAAGTGTGGGGCGAGCGTAACAATGTTCCTGTGATCGCGCAGCATACTGGCGCAGACAGCGCATCGGT
TATCTACGATGCGATTGAAGCGGCAAAAGCGCGTGGCGTCGATGTGGTTATTGCCGATACGGCGGGTCGTCTACAAAACA
AAGCCAACCTAATGGAAGAGCTACGCAAGATTGTGCGTGTGATGAAGAAAATTGATGATTCTGCACCACATGAAATCATG
CTGACGCTGGATGCAGGTACTGGCCAAAATGCGATTAGCCAAGCGAAACTTTTCAGTGATGTAGCTCCTCTAACCGGGAT
TACATTGACTAAGCTGGATGGTACAGCGAAAGGCGGCGTTATTTTCGCTATCGCTGATCAGTTTAGTATTCCAATTCGCT
ACATTGGTGTTGGCGAAGGCATTGAAGACTTGCGTCCTTTTGAAACTCAAGAGTTTATCGACGCTTTGTTTAGCCGTGAA
GAGTAA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(117-178)

SRP54-type protein, GTPase domain (SRP54)

(198-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

50.272

91.771

0.461