Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   FKM99_RS15230 Genome accession   NZ_CP041202
Coordinates   1322190..1324022 (+) Length   610 a.a.
NCBI ID   WP_141180011.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain Vb0624     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1317190..1329022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FKM99_RS15215 (FKM99_15215) - 1317917..1318684 (+) 768 WP_141180009.1 nucleotidyltransferase domain-containing protein -
  FKM99_RS15220 (FKM99_15220) - 1318681..1321044 (-) 2364 WP_141180010.1 DNA polymerase II -
  FKM99_RS15225 (FKM99_15225) letA 1321544..1322188 (+) 645 WP_005386783.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  FKM99_RS15230 (FKM99_15230) uvrC 1322190..1324022 (+) 1833 WP_141180011.1 excinuclease ABC subunit UvrC Machinery gene
  FKM99_RS15235 (FKM99_15235) pgsA 1324069..1324626 (+) 558 WP_005494716.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 69135.27 Da        Isoelectric Point: 9.4865

>NTDB_id=325042 FKM99_RS15230 WP_141180011.1 1322190..1324022(+) (uvrC) [Vibrio parahaemolyticus strain Vb0624]
MNPPFDSASFLKTVTHQPGVYRMYNADAVVIYVGKAKDLQKRLSSYFRKKVDSEKTRALVSNIAKIDVTVTHTETEALIL
EHNYIKQYLPKYNVLLRDDKSYPYIFISGHKHPRLSMHRGAKKRKGEYFGPYPDSGAVRETLHLLQKIFPVRQCEDTVYS
NRTRPCLMYQIGRCAGPCVSSIISDEEYAELVGFVRLFLQGKDQQVLKQLIEKMEVASQQLRFEDAAKFRDQIQAIRRVQ
EQQYVSEDSMDDMDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPQNTSQQEVFDSFLTQYYLSHNEARTIPSRIIL
NQELADDLEPVQKALSEVAGRKVHFHTSPTGARGGYLKLSNTNALTAITTKINHKMTINQRFKALRETLGMESIMRMECF
DISHTMGESTIASCVVFNNEGPVKQEYRRYNITGITGGDDYAAMGQALERRYSKQLDVEKIPDIIFIDGGKGQLNRAHEI
IAQYWGDWPKRPIMIGIAKGVTRKPGLETLITVDGEEFNLPSDAPALHLIQHIRDESHNHAIAGHRAKRGKTRRTSALEG
IEGVGPKRRQALLKYMGGLQELKRASVEEIAKVPGISHSLAEIIFQALKQ

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=325042 FKM99_RS15230 WP_141180011.1 1322190..1324022(+) (uvrC) [Vibrio parahaemolyticus strain Vb0624]
GTGAATCCTCCTTTCGATTCGGCTTCCTTTCTCAAGACAGTAACTCATCAGCCCGGCGTGTACCGCATGTACAACGCCGA
TGCTGTTGTTATTTACGTCGGTAAAGCCAAAGATCTTCAAAAACGCCTTTCTAGTTACTTTCGCAAAAAAGTCGACAGTG
AAAAAACACGCGCTTTGGTGAGCAATATTGCCAAAATAGATGTCACGGTGACGCATACCGAGACAGAAGCGCTGATTCTT
GAACACAATTACATCAAGCAGTATTTGCCGAAATATAACGTGCTTCTGCGTGATGATAAATCGTACCCTTATATATTCAT
TAGCGGTCATAAACATCCGAGATTGTCGATGCATCGTGGGGCCAAGAAGCGCAAAGGTGAGTATTTTGGTCCTTACCCTG
ACTCTGGGGCGGTACGAGAAACGCTGCACTTGCTGCAAAAAATATTTCCTGTTAGACAGTGTGAAGATACGGTTTACTCC
AATCGAACGCGCCCTTGCTTGATGTATCAAATTGGTCGCTGCGCTGGCCCGTGTGTGAGCTCGATTATCTCAGATGAAGA
GTATGCAGAGCTGGTGGGTTTCGTCCGTCTATTTCTGCAAGGTAAAGATCAGCAAGTACTGAAGCAGTTGATAGAGAAAA
TGGAGGTTGCAAGTCAGCAACTTCGGTTTGAAGACGCGGCAAAGTTTCGTGATCAGATACAAGCGATAAGACGAGTCCAA
GAACAGCAATATGTATCGGAAGACAGCATGGATGATATGGATGTGCTGGGTTTTGCGCAAGAGAACGGCATTGCTTGCAT
CCACATATTGATGATTCGTCAGGGTAAAGTGTTAGGCAGTCGCAGTCATTTCCCTAAGATTCCTCAAAACACGAGCCAAC
AAGAGGTATTCGATAGCTTTTTGACTCAGTATTACCTGAGCCACAATGAGGCGCGAACAATCCCATCTCGAATAATACTG
AACCAAGAGTTGGCCGACGATCTCGAACCCGTTCAAAAAGCACTGAGTGAAGTCGCAGGACGTAAGGTTCATTTTCATAC
TTCTCCGACTGGTGCGAGAGGGGGATATCTTAAGCTGTCTAATACCAATGCACTTACTGCCATCACGACAAAAATCAACC
ATAAGATGACGATCAACCAACGTTTCAAAGCACTTCGCGAGACGCTGGGAATGGAGTCTATTATGAGGATGGAGTGTTTT
GATATTTCCCATACGATGGGCGAGAGCACTATCGCATCATGTGTGGTATTCAACAACGAAGGTCCGGTAAAGCAAGAATA
CCGACGCTATAATATTACTGGAATCACAGGTGGCGATGATTATGCAGCAATGGGGCAGGCGTTAGAGCGTCGCTACTCAA
AGCAGTTGGACGTAGAAAAAATCCCAGACATCATCTTTATTGATGGTGGTAAAGGTCAGTTAAATCGTGCGCATGAAATC
ATCGCCCAGTATTGGGGAGATTGGCCTAAGCGACCAATCATGATTGGTATTGCCAAAGGTGTAACACGTAAACCTGGCCT
TGAAACCTTAATTACGGTTGATGGCGAAGAGTTCAACTTACCTAGTGACGCTCCAGCGCTACACTTGATTCAACATATTC
GCGATGAGAGTCATAATCATGCGATTGCGGGTCACAGAGCGAAACGTGGTAAAACTCGACGTACAAGCGCGTTGGAGGGG
ATTGAAGGTGTTGGGCCAAAACGACGCCAAGCTTTATTGAAATACATGGGTGGATTGCAGGAACTTAAGCGTGCAAGTGT
TGAAGAAATCGCCAAAGTACCGGGAATTAGTCACTCTTTAGCAGAAATTATTTTCCAAGCATTGAAACAATAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(205-238)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(387-542)

GIY-YIG catalytic domain (GIY-YIG)

(18-93)

Helix-hairpin-helix domain (HHH_5)

(558-609)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

36.409

99.508

0.362

Multiple sequence alignment