Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   BLCSL_RS15415 Genome accession   NZ_CP041154
Coordinates   2916780..2917559 (-) Length   259 a.a.
NCBI ID   WP_016885544.1    Uniprot ID   -
Organism   Bacillus licheniformis strain CSL2     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2911780..2922559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLCSL_RS15390 (BLCSL_15390) mreC 2912053..2912961 (-) 909 WP_003184040.1 rod shape-determining protein MreC -
  BLCSL_RS15395 (BLCSL_15395) - 2912992..2914002 (-) 1011 WP_003184042.1 rod shape-determining protein -
  BLCSL_RS15400 (BLCSL_15400) ysxA/radC 2914090..2914764 (-) 675 WP_003184045.1 DNA repair protein RadC Machinery gene
  BLCSL_RS15405 (BLCSL_15405) - 2914819..2915391 (-) 573 WP_003184048.1 nucleoside triphosphate pyrophosphatase -
  BLCSL_RS15410 (BLCSL_15410) - 2915545..2916576 (-) 1032 WP_003184050.1 SPOR domain-containing protein -
  BLCSL_RS15415 (BLCSL_15415) comC 2916780..2917559 (-) 780 WP_016885544.1 A24 family peptidase Machinery gene
  BLCSL_RS15420 (BLCSL_15420) - 2917672..2918970 (-) 1299 WP_309149026.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  BLCSL_RS15425 (BLCSL_15425) - 2919052..2921694 (-) 2643 WP_003184055.1 valine--tRNA ligase -
  BLCSL_RS15430 (BLCSL_15430) - 2922156..2922347 (+) 192 WP_003184058.1 hypothetical protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28107.89 Da        Isoelectric Point: 8.9928

>NTDB_id=324975 BLCSL_RS15415 WP_016885544.1 2916780..2917559(-) (comC) [Bacillus licheniformis strain CSL2]
MKFDSARLITMFIFYLFTAGLVLGSFFNSAGRRISEKISLIAPRSLCRVCKRQLGFSELIPVLSYLMQRGRCKGCQTPLS
IVYPAVELSAAILFAFAGMHVGHEGELVIVLALISLLLIVFVSDVTHMIIPDAVLCFFLPVFAVGRFLVPLEQWHSSLSG
AMAGGMLPLLTLLLTKGGIGWGDVKLFAVIGMALGSRLLVLAFFLSAAAGTVLGLIALLAGKLKKNEPMPFAPAILAGTL
TSCFYGEPMIEWYLQTAWW

Nucleotide


Download         Length: 780 bp        

>NTDB_id=324975 BLCSL_RS15415 WP_016885544.1 2916780..2917559(-) (comC) [Bacillus licheniformis strain CSL2]
ATGAAATTTGATTCTGCGAGGTTGATAACGATGTTCATCTTTTACCTTTTTACGGCAGGTTTAGTGCTCGGCTCTTTTTT
TAATTCGGCCGGGCGCCGCATTTCTGAAAAGATATCATTGATTGCTCCGCGTTCCCTCTGCCGCGTCTGCAAAAGGCAGC
TGGGCTTCTCGGAGCTGATACCGGTTTTGTCCTATTTGATGCAGCGGGGGAGGTGCAAAGGATGTCAAACCCCGCTCTCG
ATCGTGTATCCGGCAGTTGAGCTCTCCGCCGCCATCCTGTTTGCGTTTGCCGGCATGCACGTTGGGCATGAGGGGGAGCT
GGTGATTGTGCTTGCTCTTATATCTCTGCTTTTGATCGTCTTTGTATCTGATGTGACACACATGATCATTCCGGATGCTG
TTCTTTGTTTTTTCCTGCCTGTCTTTGCCGTCGGACGATTCCTTGTTCCTCTGGAACAGTGGCACTCAAGTTTGAGCGGT
GCGATGGCCGGCGGTATGCTGCCCCTCTTGACGCTGCTTTTGACGAAAGGGGGGATCGGCTGGGGAGACGTAAAGCTGTT
TGCGGTAATCGGCATGGCGCTCGGCAGCCGCCTCCTCGTTCTCGCTTTTTTCCTCTCGGCAGCCGCAGGAACGGTGCTTG
GTCTTATTGCACTCCTGGCAGGCAAACTGAAGAAAAATGAACCAATGCCGTTTGCTCCCGCGATTCTGGCCGGGACGCTG
ACGAGCTGCTTCTATGGCGAACCAATGATCGAGTGGTACCTTCAAACGGCATGGTGGTGA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(19-100)

Type IV leader peptidase family (Peptidase_A24)

(112-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

47.934

93.436

0.448