Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   G2583_RS12960 Genome accession   NC_013941
Coordinates   2528448..2528924 (+) Length   158 a.a.
NCBI ID   WP_001186192.1    Uniprot ID   A0A0H3JIA8
Organism   Escherichia coli O55:H7 str. CB9615     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2523448..2533924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G2583_RS12930 (G2583_2515) - 2523613..2524518 (+) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -
  G2583_RS12935 (G2583_2516) - 2524515..2525585 (+) 1071 WP_000102673.1 patatin-like phospholipase family protein -
  G2583_RS12940 (G2583_2517) - 2525721..2526404 (+) 684 WP_000775497.1 hypothetical protein -
  G2583_RS12945 (G2583_2518) - 2526420..2526830 (+) 411 WP_000846711.1 hypothetical protein -
  G2583_RS12950 (G2583_2519) - 2527051..2527872 (+) 822 WP_001234544.1 DUF932 domain-containing protein -
  G2583_RS12955 (G2583_2520) - 2527954..2528433 (+) 480 WP_000860076.1 antirestriction protein -
  G2583_RS12960 (G2583_2521) radC 2528448..2528924 (+) 477 WP_001186192.1 JAB domain-containing protein Machinery gene
  G2583_RS12965 (G2583_2522) yeeT 2528987..2529208 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  G2583_RS12970 (G2583_2523) cbeA 2529282..2529650 (+) 369 WP_001285587.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  G2583_RS12975 (G2583_2524) cbtA 2529739..2530112 (+) 374 Protein_2513 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  G2583_RS12980 (G2583_2525) yeeW 2530109..2530303 (+) 195 WP_000988600.1 DUF5983 family protein -
  G2583_RS31190 - 2530337..2530429 (+) 93 Protein_2515 DUF957 domain-containing protein -
  G2583_RS31940 - 2530718..2530855 (-) 138 Protein_2516 transposase domain-containing protein -
  G2583_RS32545 - 2530918..2531100 (+) 183 WP_001016346.1 EutP/PduV family microcompartment system protein -
  G2583_RS13000 (G2583_2527) tmaR 2531201..2531530 (-) 330 WP_000450409.1 DUF496 family protein -
  G2583_RS13005 (G2583_2528) yeeA 2531702..2532760 (-) 1059 WP_001202490.1 FUSC family protein -
  G2583_RS13010 (G2583_2529) sbmC 2532959..2533432 (-) 474 WP_001105369.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=32496 G2583_RS12960 WP_001186192.1 2528448..2528924(+) (radC) [Escherichia coli O55:H7 str. CB9615]
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=32496 G2583_RS12960 WP_001186192.1 2528448..2528924(+) (radC) [Escherichia coli O55:H7 str. CB9615]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3JIA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment