Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DHAF_RS02030 Genome accession   NC_011830
Coordinates   432722..434071 (+) Length   449 a.a.
NCBI ID   WP_015942742.1    Uniprot ID   B8G1T4
Organism   Desulfitobacterium hafniense DCB-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 427722..439071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DHAF_RS02010 (Dhaf_0386) - 427910..428380 (+) 471 WP_005810233.1 CtsR family transcriptional regulator -
  DHAF_RS02015 (Dhaf_0387) - 428397..428894 (+) 498 WP_015942740.1 UvrB/UvrC motif-containing protein -
  DHAF_RS02020 (Dhaf_0388) - 428899..429951 (+) 1053 WP_015942741.1 protein arginine kinase -
  DHAF_RS02025 (Dhaf_0389) - 429989..432469 (+) 2481 WP_005810223.1 ATP-dependent Clp protease ATP-binding subunit -
  DHAF_RS02030 (Dhaf_0390) radA 432722..434071 (+) 1350 WP_015942742.1 DNA repair protein RadA Machinery gene
  DHAF_RS02035 (Dhaf_0391) - 434207..434599 (-) 393 WP_005810220.1 hypothetical protein -
  DHAF_RS02040 (Dhaf_0392) - 434801..435277 (+) 477 WP_005810219.1 CarD family transcriptional regulator -
  DHAF_RS02045 (Dhaf_0393) - 435359..436525 (+) 1167 WP_015942743.1 PIN/TRAM domain-containing protein -
  DHAF_RS02050 (Dhaf_0394) ispD 436518..437246 (+) 729 WP_015942744.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  DHAF_RS02055 (Dhaf_0395) ispF 437336..437812 (+) 477 WP_011459082.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 48448.29 Da        Isoelectric Point: 6.4069

>NTDB_id=32487 DHAF_RS02030 WP_015942742.1 432722..434071(+) (radA) [Desulfitobacterium hafniense DCB-2]
MAKVKTRFFCQSCGQESPRWLGKCPGCGEWNTLVEEVVERAAAKRTPLGVKATPLTEIQIREEERVSSGSQELNRVLGGG
IVPGSFVLLGGEPGIGKSTLLLQTAGLLAKGMDVLYISGEESEKQIKLRAERLGIKESRLHILTETRLEVVRDVALAMGP
GLLIVDSIQTMVLEELQAAAGSVSQVREGAAFLMRLAKEEEIPIFLVGHVTKEGAIAGPRVLEHIVDTVLYFEGDRHHVY
RLLRAVKNRFGSTNEIGVFEMHEDGLVEVPNPSKVFLGENSATAPGSSVAVIVEGSRPLLVEIQALVTPTTYGPPRRTAT
GIDYNRILMLLAVLDKKVGLHLGAQDVFINIAGGIRIDEPGVDLACIAAIASSLGERPLKRYALVGEVGLTGEVRGISQI
EKRVKEAVKLGFEGCIIPRINVSAVKVPGNFTVIAVKTVEEAVQVMFEQ

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=32487 DHAF_RS02030 WP_015942742.1 432722..434071(+) (radA) [Desulfitobacterium hafniense DCB-2]
TTGGCAAAGGTGAAGACGCGGTTTTTTTGTCAGTCCTGCGGTCAGGAAAGCCCCCGGTGGTTGGGGAAATGTCCGGGCTG
TGGGGAATGGAATACCTTAGTTGAAGAAGTTGTGGAGCGTGCCGCTGCCAAGCGTACCCCCTTAGGAGTAAAGGCAACGC
CTTTGACAGAGATTCAGATCCGGGAGGAAGAACGGGTCAGCTCGGGCAGTCAGGAGTTGAACAGGGTCTTGGGTGGGGGA
ATCGTCCCCGGCTCCTTTGTTCTTCTGGGCGGCGAGCCGGGCATCGGCAAATCCACCCTGCTTCTGCAAACGGCGGGATT
ATTGGCCAAGGGCATGGATGTACTGTATATCTCCGGAGAAGAATCGGAGAAGCAGATTAAGCTGAGAGCAGAGCGGCTGG
GCATTAAGGAATCCCGTTTGCATATTTTAACGGAGACCCGGCTGGAGGTGGTCCGGGACGTGGCTTTGGCTATGGGGCCG
GGTCTCTTAATCGTCGATTCTATCCAAACCATGGTGCTGGAAGAGCTGCAGGCCGCCGCAGGCAGTGTGAGCCAGGTGCG
GGAGGGCGCAGCCTTTTTGATGCGGTTAGCCAAAGAGGAGGAGATCCCCATCTTTCTCGTCGGCCATGTGACCAAGGAAG
GAGCTATCGCCGGACCGAGAGTACTGGAACATATTGTGGATACGGTGCTTTATTTTGAAGGGGACCGTCATCATGTTTAT
CGTTTGTTAAGGGCTGTGAAGAATCGTTTCGGCTCCACCAATGAGATCGGTGTTTTTGAGATGCATGAAGACGGCCTGGT
GGAGGTTCCCAATCCCTCCAAAGTGTTCTTGGGAGAGAATTCAGCCACGGCCCCCGGCTCCTCGGTGGCGGTGATCGTGG
AAGGTTCCCGGCCTTTGCTGGTGGAGATTCAGGCTCTCGTGACACCTACCACCTATGGACCGCCTCGCCGTACGGCTACG
GGAATCGACTACAACCGGATTTTGATGCTCTTGGCTGTTTTGGATAAAAAGGTAGGCCTTCATCTGGGAGCCCAGGATGT
GTTTATCAATATTGCCGGCGGTATCCGCATCGATGAACCGGGAGTAGATCTGGCCTGCATTGCAGCCATTGCCTCCAGCC
TGGGGGAACGGCCGCTGAAGCGTTATGCTCTGGTTGGGGAAGTGGGGCTTACCGGAGAAGTGCGCGGGATTTCTCAGATC
GAGAAGCGGGTGAAGGAAGCTGTGAAGCTGGGCTTTGAAGGCTGCATTATTCCCCGGATTAATGTCTCAGCGGTGAAGGT
TCCCGGGAATTTTACGGTGATTGCGGTGAAGACGGTGGAGGAGGCTGTTCAGGTTATGTTTGAGCAGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(337-421)

AAA domain (AAA_25)

(66-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B8G1T4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

57.489

100

0.581
  radA Streptococcus pneumoniae Rx1

53.097

100

0.535
  radA Streptococcus pneumoniae D39

53.097

100

0.535
  radA Streptococcus pneumoniae R6

53.097

100

0.535
  radA Streptococcus pneumoniae TIGR4

53.097

100

0.535
  radA Streptococcus mitis NCTC 12261

53.097

100

0.535
  radA Streptococcus mitis SK321

53.097

100

0.535

Multiple sequence alignment