Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   DXF96_RS15820 Genome accession   NZ_CP033687
Coordinates   3279229..3281592 (-) Length   787 a.a.
NCBI ID   WP_017551046.1    Uniprot ID   A0AAU7WJK5
Organism   Heyndrickxia coagulans strain DSM 2314     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3274229..3286592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXF96_RS15795 (DXF96_16225) - 3274572..3275222 (-) 651 WP_014097896.1 HlyD family efflux transporter periplasmic adaptor subunit -
  DXF96_RS15800 (DXF96_16230) - 3275230..3275670 (-) 441 WP_026683588.1 MarR family winged helix-turn-helix transcriptional regulator -
  DXF96_RS15805 (DXF96_16235) dtd 3275852..3276292 (-) 441 WP_026683589.1 D-aminoacyl-tRNA deacylase -
  DXF96_RS15810 (DXF96_16240) - 3276306..3278495 (-) 2190 WP_014097893.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  DXF96_RS15815 (DXF96_16245) - 3278717..3279238 (-) 522 WP_014097892.1 adenine phosphoribosyltransferase -
  DXF96_RS15820 (DXF96_16250) recJ 3279229..3281592 (-) 2364 WP_017551046.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  DXF96_RS15825 (DXF96_16255) secDF 3281681..3283945 (-) 2265 WP_017551047.1 protein translocase subunit SecDF -
  DXF96_RS15830 (DXF96_16260) - 3284091..3284411 (-) 321 WP_017551048.1 post-transcriptional regulator -
  DXF96_RS15835 (DXF96_16265) spoVB 3284515..3286059 (+) 1545 WP_017551049.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 88031.12 Da        Isoelectric Point: 5.9374

>NTDB_id=324866 DXF96_RS15820 WP_017551046.1 3279229..3281592(-) (recJ) [Heyndrickxia coagulans strain DSM 2314]
MLQSRTRWRVPEMEPKAAATISQQLNVSPLVSKLLVNRGITDVEEARSFLFHEGLAYYDPFLLHDMEKAAARIREAIKKA
EPVLVFGDYDADGVTSTAIMMAALNDLGAHAEFYIPDRFKEGYGPNEAAFRRAAEEGFQLIITVDTGIAAVHEAEVARKL
GITLIITDHHEPGPVLPEAFAIVHPKHPESTYPFRELSGAGVAFKVAHALYGKVPEQLEDLAAIGTVADLVPLLDENRLI
AINGIKRLRTTKRAGLVALCRCADIRQEEINEETIGFVLAPRLNAAGRLQHAAPAAELLMTEDTEEAGMLAETIDGLNKE
RQKIVNDMTNEAIELVEEEVEKGARVLVVGKEGWNAGVIGIAASRLTERFYRPAIVLSFDPETGLAKGSARSIDGFHMFN
ELSKCRDILPHFGGHPMAAGMTLSLSDVEELRRRLNEQAAAFPDEMFVPVTNISAEISIEEAGMEAIREMALLSPFGTAN
PKPLLLLDGAECPQIRAIGADGKHLKLTLSKNGTTLDGIGFGLGHLAPHISPSAYISVVGELSINEWNNIRKPQMMVKDI
KITNWQLFDFRGNRPLKQWARYVPEEDQAFVVFQKETLRNLPLPDFSVRLVPVATMEEARAFDPANKNIVFLDLPKGPRM
MAALLEGGSPARIYAYFYHAGNHFFSTFPTREHFKWFYAFLAKRKTFNLKQHGDELAAYRGWSRNTIDFISQVFFELDFV
TIKDGFISLKAAKQKRDLKESLTYQKKLAQYQMEKDLLYSSFQELKMWFDQMIKPAVQYEEETAKWI

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=324866 DXF96_RS15820 WP_017551046.1 3279229..3281592(-) (recJ) [Heyndrickxia coagulans strain DSM 2314]
ATGCTGCAGTCAAGAACAAGATGGCGGGTGCCGGAAATGGAACCAAAAGCAGCCGCAACGATCTCGCAACAATTGAACGT
TTCGCCACTTGTTTCAAAATTGCTTGTAAACCGCGGCATAACGGATGTTGAAGAAGCGCGGTCTTTTTTATTCCATGAAG
GGCTAGCGTATTATGATCCGTTTTTGCTGCATGATATGGAAAAAGCAGCGGCCCGCATCCGCGAAGCGATTAAAAAAGCA
GAACCGGTTCTCGTCTTCGGCGATTACGATGCGGACGGCGTAACGAGTACTGCCATCATGATGGCCGCTTTAAACGATCT
TGGCGCCCATGCTGAATTTTATATCCCGGACCGGTTTAAAGAAGGGTATGGGCCAAATGAAGCGGCTTTCCGCCGGGCGG
CTGAAGAGGGTTTTCAGCTAATCATCACCGTTGATACCGGTATTGCCGCTGTCCACGAAGCGGAAGTGGCCCGCAAACTC
GGGATCACGCTCATTATTACGGACCATCACGAACCTGGGCCGGTATTGCCGGAAGCCTTTGCCATCGTCCATCCGAAGCA
TCCGGAAAGTACATACCCGTTCCGGGAACTGTCGGGCGCAGGCGTCGCTTTTAAAGTCGCCCATGCGCTGTACGGCAAAG
TGCCGGAACAGCTTGAAGATTTGGCCGCTATCGGGACGGTCGCGGATCTTGTGCCGCTTCTGGACGAAAACCGGCTGATT
GCCATAAACGGCATCAAACGGTTGAGAACGACAAAGCGGGCGGGGCTTGTGGCGCTGTGCCGGTGTGCGGATATCCGCCA
GGAAGAGATCAATGAAGAAACCATCGGCTTTGTGCTCGCCCCCCGCTTAAATGCGGCCGGGCGCCTGCAACATGCGGCAC
CGGCAGCGGAACTGCTAATGACCGAAGACACAGAAGAAGCCGGGATGCTCGCTGAAACGATTGACGGGCTCAATAAAGAA
CGGCAAAAAATCGTAAACGACATGACAAATGAAGCAATCGAACTGGTGGAAGAAGAAGTGGAAAAGGGGGCGCGTGTCCT
TGTTGTCGGGAAAGAAGGCTGGAATGCCGGCGTAATCGGCATTGCCGCCTCGCGCCTTACAGAACGCTTTTACCGGCCTG
CGATTGTGCTCAGCTTTGACCCGGAAACAGGGCTGGCAAAAGGATCGGCGCGCAGCATTGACGGCTTCCATATGTTTAAC
GAATTATCGAAATGCAGGGATATTTTGCCGCATTTTGGCGGGCATCCGATGGCGGCGGGGATGACGCTTTCTTTATCCGA
TGTGGAGGAACTGCGGCGCCGGCTGAACGAACAGGCCGCGGCATTTCCGGATGAGATGTTTGTGCCGGTTACGAACATCA
GCGCTGAAATTTCCATAGAAGAAGCGGGGATGGAAGCGATCCGCGAAATGGCATTGCTCTCGCCGTTTGGCACGGCGAAT
CCGAAGCCGCTTCTGTTGCTGGACGGGGCCGAATGCCCGCAAATCCGGGCGATCGGCGCAGACGGGAAACATTTGAAATT
GACGCTTTCTAAAAACGGCACAACGCTCGATGGGATCGGCTTCGGGCTCGGGCATCTTGCCCCGCATATTTCTCCTTCTG
CCTATATATCGGTTGTCGGGGAGCTGTCCATCAATGAATGGAACAATATCCGCAAGCCGCAAATGATGGTGAAGGATATC
AAAATCACAAACTGGCAATTGTTTGATTTCAGGGGCAACAGGCCTTTAAAGCAATGGGCACGGTACGTCCCGGAAGAAGA
CCAGGCTTTTGTTGTTTTTCAAAAAGAAACATTGCGGAACCTGCCGCTGCCGGATTTTTCCGTCCGCCTTGTGCCGGTTG
CGACAATGGAAGAGGCAAGGGCATTTGATCCGGCAAATAAAAACATTGTGTTTCTGGATCTTCCGAAAGGCCCGCGGATG
ATGGCGGCACTGCTTGAGGGCGGTTCGCCGGCCAGGATTTATGCGTATTTTTACCATGCCGGGAACCACTTTTTCAGCAC
GTTCCCGACACGCGAACATTTTAAATGGTTTTACGCTTTTCTTGCAAAAAGGAAAACGTTCAACCTAAAGCAGCACGGGG
ATGAGCTGGCGGCTTATCGCGGCTGGTCGAGAAATACCATCGATTTTATTTCGCAGGTGTTTTTTGAACTTGATTTTGTT
ACAATAAAGGATGGATTTATTTCCCTGAAAGCAGCCAAACAAAAACGCGATTTAAAGGAATCTCTTACGTATCAAAAAAA
ACTGGCACAATATCAAATGGAAAAGGACCTGCTGTACTCATCTTTCCAGGAGCTCAAGATGTGGTTTGACCAAATGATCA
AGCCTGCTGTACAGTATGAGGAGGAAACAGCAAAATGGATTTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-438)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHH family (DHH)

(83-226)

RecJ OB domain (RecJ_OB)

(454-559)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.478

100

0.525

Multiple sequence alignment