Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   DXF96_RS15115 Genome accession   NZ_CP033687
Coordinates   3148496..3149620 (-) Length   374 a.a.
NCBI ID   WP_061577075.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain DSM 2314     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3143496..3154620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXF96_RS15070 (DXF96_15500) - 3144064..3144855 (+) 792 WP_014098030.1 YqhG family protein -
  DXF96_RS15075 (DXF96_15505) - 3144888..3145064 (-) 177 WP_014098029.1 YqzE family protein -
  DXF96_RS15080 (DXF96_15510) - 3145051..3145608 (-) 558 WP_014098028.1 shikimate kinase -
  DXF96_RS15085 (DXF96_15515) comGG 3145605..3145973 (-) 369 WP_014098027.1 competence type IV pilus minor pilin ComGG -
  DXF96_RS15090 (DXF96_15520) comGF 3145970..3146455 (-) 486 WP_035184588.1 competence type IV pilus minor pilin ComGF -
  DXF96_RS15095 (DXF96_15525) - 3146418..3146726 (-) 309 WP_035187947.1 type II secretion system protein -
  DXF96_RS15100 (DXF96_15530) comGD 3146713..3147156 (-) 444 WP_035187944.1 competence type IV pilus minor pilin ComGD -
  DXF96_RS15105 (DXF96_15535) comGC 3147153..3147464 (-) 312 WP_013859645.1 competence type IV pilus major pilin ComGC -
  DXF96_RS15110 (DXF96_15540) comGB 3147532..3148596 (-) 1065 WP_235601868.1 competence type IV pilus assembly protein ComGB -
  DXF96_RS15115 (DXF96_15545) comGA 3148496..3149620 (-) 1125 WP_061577075.1 competence type IV pilus ATPase ComGA Machinery gene
  DXF96_RS15120 (DXF96_15550) - 3149815..3150522 (+) 708 WP_014098020.1 metalloregulator ArsR/SmtB family transcription factor -
  DXF96_RS15125 (DXF96_15555) - 3150600..3150842 (+) 243 WP_014098019.1 DUF2626 domain-containing protein -
  DXF96_RS15130 (DXF96_15560) - 3150911..3151540 (-) 630 WP_035187941.1 MBL fold metallo-hydrolase -
  DXF96_RS15135 (DXF96_15565) - 3151670..3151843 (+) 174 WP_014098017.1 DUF2759 domain-containing protein -
  DXF96_RS15140 (DXF96_15570) - 3152148..3153116 (-) 969 WP_014098016.1 ROK family glucokinase -
  DXF96_RS15145 (DXF96_15575) - 3153109..3153330 (-) 222 WP_013859652.1 YqgQ family protein -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 42374.92 Da        Isoelectric Point: 9.5494

>NTDB_id=324862 DXF96_RS15115 WP_061577075.1 3148496..3149620(-) (comGA) [Heyndrickxia coagulans strain DSM 2314]
MSVEKIAELLIGQAVKNNVTDVHIVPKEKHYHVQFRQYGRLYPHRNLSAKAGERLISHLKFMSSMDISEKRKPQSGSFAM
NVLQQTISLRISTLPTSLSKESLVIRILPHEEKFQLSQISLFPSSTKKIMALLNHSHGMLIFSGPTGSGKSTTMYTLVEH
CAKRFLRNVITLEDPVEKQSDSFLQVQVNEKAGITYSTGLKAILRHDPDIILVGEIRDAETARIAIRASLTGHLVLTTLH
TRDAKGAIYRLMEFGVSIHEMEQTLLAVSAQRLITLRCPVCGGIRCPHDSQDCPRSREKRQTAVYELLYGKNLQRVLKEA
KGEQVYYHYPTLKEWLRKGIVLGYISEEEYHRWIAEEEEADKPQTAGALSYPGR

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=324862 DXF96_RS15115 WP_061577075.1 3148496..3149620(-) (comGA) [Heyndrickxia coagulans strain DSM 2314]
ATGTCAGTTGAAAAAATTGCGGAACTTTTGATCGGACAGGCGGTAAAAAACAATGTGACCGATGTCCATATCGTTCCGAA
AGAAAAGCATTACCATGTCCAGTTCCGGCAGTACGGAAGGCTGTACCCCCACCGCAACCTTTCCGCGAAAGCCGGGGAAA
GGCTGATATCCCATTTGAAATTTATGTCTTCCATGGATATCAGTGAAAAACGGAAACCCCAAAGCGGGTCGTTCGCCATG
AACGTTTTGCAGCAGACGATCTCCTTAAGGATTTCGACGCTGCCAACCTCTCTTTCCAAAGAGAGCCTCGTTATTCGGAT
CTTGCCCCATGAAGAAAAATTCCAGCTCAGCCAAATTTCACTTTTTCCATCGAGCACAAAAAAAATAATGGCGCTGCTCA
ACCATTCGCATGGGATGCTGATTTTCAGCGGCCCGACTGGAAGCGGCAAGTCTACGACGATGTATACGCTTGTTGAGCAC
TGCGCAAAACGGTTTTTACGGAATGTGATTACACTGGAAGACCCTGTTGAAAAACAAAGCGACTCGTTTTTGCAGGTACA
GGTGAATGAAAAAGCAGGTATTACTTACAGCACAGGGCTGAAAGCGATTTTGCGCCATGATCCGGATATTATCCTGGTGG
GGGAAATCCGTGATGCCGAAACAGCAAGAATTGCGATCCGCGCATCACTCACCGGCCATCTCGTGCTGACGACATTGCAT
ACGCGTGACGCAAAGGGCGCGATTTACAGGCTGATGGAATTTGGGGTGAGCATCCACGAAATGGAGCAGACTTTGCTCGC
AGTCAGCGCACAGCGGCTGATTACATTGCGATGCCCGGTATGCGGTGGGATCCGCTGTCCGCATGATTCGCAAGATTGCC
CACGCAGCCGAGAAAAGCGGCAAACCGCAGTATATGAGCTGCTGTACGGGAAAAATTTGCAGCGAGTGTTGAAAGAAGCA
AAGGGGGAACAAGTCTACTATCATTATCCGACACTGAAAGAATGGCTCAGAAAGGGGATTGTGCTTGGATACATTTCTGA
AGAAGAGTATCACCGCTGGATTGCCGAAGAGGAAGAAGCGGATAAGCCTCAAACTGCAGGGGCGCTTTCTTACCCGGGTC
GGTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

54.19

95.722

0.519

Multiple sequence alignment