Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CI675_RS08475 Genome accession   NZ_CP041110
Coordinates   1787554..1788981 (-) Length   475 a.a.
NCBI ID   WP_000980567.1    Uniprot ID   -
Organism   Escherichia coli strain ECCTRSRTH03     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1782554..1793981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CI675_RS08445 (CI675_0008445) yeeZ 1782609..1783433 (+) 825 WP_000754749.1 SDR family oxidoreductase -
  CI675_RS08450 (CI675_0008450) yeeY 1783479..1784408 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  CI675_RS08455 (CI675_0008455) yoeI 1784623..1784685 (+) 63 WP_010723108.1 membrane protein YoeI -
  CI675_RS08460 (CI675_0008460) plaP 1784675..1786033 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  CI675_RS08465 (CI675_0008465) tsuA 1786212..1787270 (+) 1059 WP_000492321.1 thiosulfate utilization transporter TsuA/YeeE -
  CI675_RS08470 (CI675_0008470) tsuB 1787284..1787511 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  CI675_RS08475 (CI675_0008475) sbcB 1787554..1788981 (-) 1428 WP_000980567.1 exodeoxyribonuclease I Machinery gene
  CI675_RS08480 (CI675_0008480) dacD 1789190..1790356 (+) 1167 WP_001310935.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  CI675_RS08485 (CI675_0008485) sbmC 1790475..1790948 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  CI675_RS08490 (CI675_0008490) yeeA 1791146..1792204 (+) 1059 WP_001200905.1 FUSC family protein -
  CI675_RS08495 (CI675_0008495) tmaR 1792376..1792705 (+) 330 WP_000450409.1 DUF496 family protein -
  CI675_RS25550 (CI675_0008500) - 1792806..1792988 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  CI675_RS25210 - 1793108..1793188 (+) 81 WP_023441679.1 hypothetical protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54503.77 Da        Isoelectric Point: 5.4720

>NTDB_id=324749 CI675_RS08475 WP_000980567.1 1787554..1788981(-) (sbcB) [Escherichia coli strain ECCTRSRTH03]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQIFTSEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=324749 CI675_RS08475 WP_000980567.1 1787554..1788981(-) (sbcB) [Escherichia coli strain ECCTRSRTH03]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAACAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGCGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGATCTTCACGTCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581