Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EFP20_RS23165 Genome accession   NZ_CP033672
Coordinates   5155565..5156941 (-) Length   458 a.a.
NCBI ID   WP_015875305.1    Uniprot ID   A0AAP9Y5L3
Organism   Burkholderia glumae strain BGR80S     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5150565..5161941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFP20_RS23145 (EFP20_22935) cls 5151034..5152473 (+) 1440 WP_015875309.1 cardiolipin synthase -
  EFP20_RS23150 (EFP20_22940) - 5152515..5152994 (-) 480 WP_015875308.1 glutathione peroxidase -
  EFP20_RS23155 (EFP20_22945) - 5153189..5155123 (+) 1935 WP_015875307.1 ATP-binding cassette domain-containing protein -
  EFP20_RS23160 (EFP20_22950) - 5155164..5155427 (-) 264 WP_015875306.1 DUF2866 domain-containing protein -
  EFP20_RS23165 (EFP20_22955) radA 5155565..5156941 (-) 1377 WP_015875305.1 DNA repair protein RadA Machinery gene
  EFP20_RS23170 (EFP20_22960) alr 5156952..5158022 (-) 1071 WP_015875304.1 alanine racemase -
  EFP20_RS23175 (EFP20_22965) lplT 5158235..5159542 (+) 1308 WP_015875303.1 lysophospholipid transporter LplT -
  EFP20_RS23180 (EFP20_22970) thiD 5159688..5160497 (+) 810 WP_015875302.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  EFP20_RS23185 (EFP20_22975) - 5160743..5161705 (-) 963 WP_035982481.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48595.02 Da        Isoelectric Point: 7.2037

>NTDB_id=324711 EFP20_RS23165 WP_015875305.1 5155565..5156941(-) (radA) [Burkholderia glumae strain BGR80S]
MAKQKTVYVCTACGGQSPKWQGQCPACHAWNTLLESAAETPSSHRFQALAKSAPVQRLADIDAADVPRFTTGIGEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLAQLASQRRALYISGEESAAQIALRAQRLALLDHGGDAADLKLLAEIQLEKIQ
ATIDAERPDVAVIDSIQTVYSDALSSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGALAGPRVLEHIVDTVLYF
EGDTHSSYRLVRAIKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEEVVPGSCVLVTQEGSRPLLVEVQALVDTANV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTMALIPKANAPKQPIEGLTVMAVERIEQAIDRVRGLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=324711 EFP20_RS23165 WP_015875305.1 5155565..5156941(-) (radA) [Burkholderia glumae strain BGR80S]
GTGGCAAAACAGAAAACCGTCTACGTCTGTACTGCATGCGGCGGCCAGTCGCCGAAATGGCAGGGCCAGTGCCCGGCCTG
CCATGCCTGGAACACGCTGCTCGAATCGGCTGCCGAGACGCCGTCCTCGCACCGCTTCCAGGCGCTCGCCAAGAGCGCGC
CGGTGCAGCGCCTGGCCGACATCGACGCGGCCGACGTGCCGCGCTTCACGACCGGCATCGGCGAGTTCGATCGCGTGCTC
GGCGGCGGGCTGGTGGCGGGCGGCGTGGTGCTGATCGGCGGCGACCCCGGCATCGGCAAGTCCACGCTGCTGCTGCAGTC
GCTCGCGCAGCTCGCGAGCCAACGGCGCGCGCTCTACATCAGCGGCGAGGAATCGGCCGCGCAGATCGCGCTGCGCGCGC
AGCGGCTCGCGCTGCTCGACCATGGCGGCGACGCGGCCGACCTGAAGCTGCTGGCCGAGATCCAGCTCGAGAAGATCCAG
GCCACGATCGACGCGGAGCGCCCCGACGTGGCCGTGATCGATTCGATCCAGACGGTCTATTCGGACGCGCTGTCGTCGGC
GCCGGGCTCGGTCGCGCAGGTGCGCGAGTGCGCGGCGCAGCTCACGCGCATCGCCAAGCAGTCCGGCACCGCGATCATAA
TGGTCGGTCACGTCACGAAGGAGGGCGCCCTGGCCGGCCCGCGCGTGCTCGAGCACATCGTCGACACGGTGCTGTATTTC
GAGGGCGACACGCATTCGTCGTACCGGCTGGTGCGCGCGATCAAGAACCGCTTCGGCGCCGTCAACGAACTCGGCGTGTT
CGCGATGACCGAGCGCGGCTTGCGCGGCGTGGCGAACCCGTCCGCGCTGTTCCTCTCGCAGCACGAGGAGGTGGTGCCCG
GCTCCTGCGTGCTGGTCACGCAGGAGGGCTCGCGGCCGCTGCTGGTGGAGGTGCAGGCGCTCGTCGACACCGCCAACGTG
CCGAATCCGCGCCGGCTCGCCGTCGGGCTCGAACAGAACCGGCTGGCCATGCTGCTGGCCGTGCTGCACCGCCACGCGGG
CATCGCCTGCTTCGATCAGGACGTGTTCCTGAATGCGGTGGGCGGCGTCAAGATCACCGAGCCGGCGGCCGATCTGGCGG
TGCTGCTGGCGATCCATTCGTCGATGCGTAACAAAGCGTTGCCGAAGGGTCTGATCGTATTCGGCGAAGTGGGGCTGGCC
GGCGAGATCCGGCCGTCGCCGCGCGGCCAGGAGCGCCTGCGCGAGGCCGCCAAGCTGGGCTTCACGATGGCCCTGATTCC
CAAGGCCAACGCGCCCAAGCAGCCGATCGAGGGGCTCACCGTGATGGCCGTCGAGCGCATCGAGCAGGCCATCGACCGCG
TGCGCGGCCTCGAGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-33)

AAA domain (AAA_25)

(78-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.491

100

0.491
  radA Streptococcus pneumoniae Rx1

46.638

100

0.469
  radA Streptococcus pneumoniae D39

46.638

100

0.469
  radA Streptococcus pneumoniae R6

46.638

100

0.469
  radA Streptococcus pneumoniae TIGR4

46.638

100

0.469
  radA Streptococcus mitis SK321

46.943

100

0.469
  radA Streptococcus mitis NCTC 12261

46.608

99.782

0.465

Multiple sequence alignment