Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EFP19_RS11565 Genome accession   NZ_CP033666
Coordinates   2441926..2443302 (-) Length   458 a.a.
NCBI ID   WP_017922819.1    Uniprot ID   -
Organism   Burkholderia glumae strain BGR21S     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2436926..2448302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFP19_RS11545 (EFP19_11470) cls 2437405..2438844 (+) 1440 WP_100555915.1 cardiolipin synthase -
  EFP19_RS11550 (EFP19_11475) - 2438880..2439359 (-) 480 WP_017424425.1 glutathione peroxidase -
  EFP19_RS11555 (EFP19_11480) - 2439550..2441484 (+) 1935 WP_015875307.1 ATP-binding cassette domain-containing protein -
  EFP19_RS11560 (EFP19_11485) - 2441525..2441788 (-) 264 WP_015875306.1 DUF2866 domain-containing protein -
  EFP19_RS11565 (EFP19_11490) radA 2441926..2443302 (-) 1377 WP_017922819.1 DNA repair protein RadA Machinery gene
  EFP19_RS11570 (EFP19_11495) alr 2443313..2444383 (-) 1071 WP_015875304.1 alanine racemase -
  EFP19_RS11575 (EFP19_11500) lplT 2444596..2445903 (+) 1308 WP_015875303.1 lysophospholipid transporter LplT -
  EFP19_RS11580 (EFP19_11505) thiD 2446049..2446858 (+) 810 WP_124836133.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  EFP19_RS11585 (EFP19_11510) - 2447084..2448046 (-) 963 WP_161520910.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48580.99 Da        Isoelectric Point: 7.2037

>NTDB_id=324697 EFP19_RS11565 WP_017922819.1 2441926..2443302(-) (radA) [Burkholderia glumae strain BGR21S]
MAKQKTVYVCTACGGQSPKWQGQCPACHAWNTLVESAAETPSSHRFQALAKSAPVQRLADIDAADVPRFTTGIGEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLAQLASQRRALYISGEESAAQIALRAQRLALLDHGGDAADLKLLAEIQLEKIQ
ATIDAERPDVAVIDSIQTVYSDALSSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGALAGPRVLEHIVDTVLYF
EGDTHSSYRLVRAIKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEEVVPGSCVLVTQEGSRPLLVEVQALVDTANV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTMALIPKANAPKQPIEGLTVMAVERIEQAIDRVRGLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=324697 EFP19_RS11565 WP_017922819.1 2441926..2443302(-) (radA) [Burkholderia glumae strain BGR21S]
GTGGCAAAACAGAAAACCGTCTACGTCTGTACCGCATGCGGCGGCCAGTCGCCGAAATGGCAGGGCCAGTGCCCGGCCTG
CCATGCCTGGAACACGCTGGTCGAATCGGCTGCCGAGACGCCGTCCTCGCACCGCTTCCAGGCGCTCGCCAAGAGCGCGC
CGGTGCAGCGCCTGGCCGACATCGACGCGGCCGACGTGCCGCGCTTCACGACCGGCATCGGCGAGTTCGATCGCGTGCTC
GGCGGCGGGCTGGTGGCGGGCGGCGTGGTGCTGATCGGCGGCGACCCCGGCATCGGCAAGTCCACGCTGCTGCTGCAGTC
GCTCGCGCAGCTCGCGAGCCAACGGCGCGCGCTCTACATCAGCGGCGAGGAATCGGCCGCGCAGATCGCGCTGCGCGCGC
AGCGGCTCGCGCTGCTCGACCATGGCGGCGACGCGGCCGACCTGAAGCTGCTGGCCGAGATCCAGCTCGAGAAGATCCAG
GCCACGATCGACGCGGAGCGCCCCGACGTGGCCGTGATCGATTCGATCCAGACGGTCTATTCGGACGCGCTGTCGTCGGC
GCCGGGCTCGGTCGCGCAGGTGCGCGAGTGCGCGGCGCAGCTCACGCGCATCGCCAAGCAGTCCGGCACCGCGATCATCA
TGGTCGGTCACGTCACGAAGGAGGGCGCCCTGGCCGGCCCGCGCGTGCTCGAGCACATCGTCGACACGGTGCTGTATTTC
GAGGGCGACACGCATTCGTCGTACCGGCTGGTGCGCGCGATCAAGAACCGCTTCGGCGCCGTCAACGAACTCGGCGTGTT
CGCGATGACCGAGCGCGGGCTGCGCGGCGTGGCGAACCCGTCCGCGCTGTTCCTCTCGCAGCACGAGGAGGTGGTGCCCG
GCTCCTGCGTGCTGGTCACGCAGGAGGGCTCGCGGCCGCTGCTGGTGGAGGTGCAGGCGCTCGTCGACACCGCCAACGTG
CCGAATCCGCGCCGGCTCGCCGTCGGGCTCGAACAGAACCGGCTGGCCATGCTGCTGGCCGTGCTGCACCGCCACGCGGG
CATCGCCTGCTTCGATCAGGACGTGTTCCTGAATGCGGTGGGCGGCGTCAAGATCACCGAGCCGGCGGCCGATCTGGCGG
TGCTGCTGGCGATCCATTCGTCGATGCGTAACAAAGCGTTGCCGAAGGGTCTGATCGTATTCGGCGAAGTGGGGCTGGCC
GGCGAGATCCGGCCGTCGCCGCGCGGCCAGGAGCGCCTGCGCGAGGCCGCCAAGCTGGGCTTCACGATGGCCCTGATTCC
CAAGGCCAACGCGCCCAAGCAGCCGATCGAGGGGCTCACCGTGATGGCCGTCGAGCGCATCGAGCAGGCCATCGACCGCG
TGCGCGGCCTCGAGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(78-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.707

100

0.493
  radA Streptococcus mitis SK321

47.162

100

0.472
  radA Streptococcus pneumoniae Rx1

46.855

100

0.472
  radA Streptococcus pneumoniae D39

46.855

100

0.472
  radA Streptococcus pneumoniae R6

46.855

100

0.472
  radA Streptococcus pneumoniae TIGR4

46.855

100

0.472
  radA Streptococcus mitis NCTC 12261

46.827

99.782

0.467

Multiple sequence alignment