Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EE994_RS09095 Genome accession   NZ_CP033641
Coordinates   1373736..1375112 (+) Length   458 a.a.
NCBI ID   WP_015875305.1    Uniprot ID   A0AAP9Y5L3
Organism   Burkholderia glumae strain YH38     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1368736..1380112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EE994_RS09075 - 1368972..1369934 (+) 963 WP_015875301.1 DUF1853 family protein -
  EE994_RS09080 thiD 1370180..1370989 (-) 810 WP_015875302.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  EE994_RS09085 lplT 1371135..1372442 (-) 1308 WP_015875303.1 lysophospholipid transporter LplT -
  EE994_RS09090 alr 1372655..1373725 (+) 1071 WP_015875304.1 alanine racemase -
  EE994_RS09095 radA 1373736..1375112 (+) 1377 WP_015875305.1 DNA repair protein RadA Machinery gene
  EE994_RS09100 - 1375250..1375513 (+) 264 WP_015875306.1 DUF2866 domain-containing protein -
  EE994_RS09105 - 1375554..1377488 (-) 1935 WP_015875307.1 ATP-binding cassette domain-containing protein -
  EE994_RS09110 - 1377683..1378162 (+) 480 WP_015875308.1 glutathione peroxidase -
  EE994_RS09115 cls 1378204..1379643 (-) 1440 WP_015875309.1 cardiolipin synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48595.02 Da        Isoelectric Point: 7.2037

>NTDB_id=324624 EE994_RS09095 WP_015875305.1 1373736..1375112(+) (radA) [Burkholderia glumae strain YH38]
MAKQKTVYVCTACGGQSPKWQGQCPACHAWNTLLESAAETPSSHRFQALAKSAPVQRLADIDAADVPRFTTGIGEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLAQLASQRRALYISGEESAAQIALRAQRLALLDHGGDAADLKLLAEIQLEKIQ
ATIDAERPDVAVIDSIQTVYSDALSSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGALAGPRVLEHIVDTVLYF
EGDTHSSYRLVRAIKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEEVVPGSCVLVTQEGSRPLLVEVQALVDTANV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTMALIPKANAPKQPIEGLTVMAVERIEQAIDRVRGLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=324624 EE994_RS09095 WP_015875305.1 1373736..1375112(+) (radA) [Burkholderia glumae strain YH38]
GTGGCAAAACAGAAAACCGTCTACGTCTGTACTGCATGCGGCGGCCAGTCGCCGAAATGGCAGGGCCAGTGCCCGGCCTG
CCATGCCTGGAACACGCTGCTCGAATCGGCTGCCGAGACGCCGTCCTCGCACCGCTTCCAGGCGCTCGCCAAGAGCGCGC
CGGTGCAGCGCCTGGCCGACATCGACGCGGCCGACGTGCCGCGCTTCACGACCGGCATCGGCGAGTTCGATCGCGTGCTC
GGCGGCGGGCTGGTGGCGGGCGGCGTGGTGCTGATCGGCGGCGACCCCGGCATCGGCAAGTCCACGCTGCTGCTGCAGTC
GCTCGCGCAGCTCGCGAGCCAACGGCGCGCGCTCTACATCAGCGGCGAGGAATCGGCCGCGCAGATCGCGCTGCGCGCGC
AGCGGCTCGCGCTGCTCGACCATGGCGGCGACGCGGCCGACCTGAAGCTGCTGGCCGAGATCCAGCTCGAGAAGATCCAG
GCCACGATCGACGCGGAGCGCCCCGACGTGGCCGTGATCGATTCGATCCAGACGGTCTATTCGGACGCGCTGTCGTCGGC
GCCGGGCTCGGTCGCGCAGGTGCGCGAGTGCGCGGCGCAGCTCACGCGCATCGCCAAGCAGTCCGGCACCGCGATCATAA
TGGTCGGTCACGTCACGAAGGAGGGCGCCCTGGCCGGCCCGCGCGTGCTCGAGCACATCGTCGACACGGTGCTGTATTTC
GAGGGCGACACGCATTCGTCGTACCGGCTGGTGCGCGCGATCAAGAACCGCTTCGGCGCCGTCAACGAACTCGGCGTGTT
CGCGATGACCGAGCGCGGCTTGCGCGGCGTGGCGAACCCGTCCGCGCTGTTCCTCTCGCAGCACGAGGAGGTGGTGCCCG
GCTCCTGCGTGCTGGTCACGCAGGAGGGCTCGCGGCCGCTGCTGGTGGAGGTGCAGGCGCTCGTCGACACCGCCAACGTG
CCGAATCCGCGCCGGCTCGCCGTCGGGCTCGAACAGAACCGGCTGGCCATGCTGCTGGCCGTGCTGCACCGCCACGCGGG
CATCGCCTGCTTCGATCAGGACGTGTTCCTGAATGCGGTGGGCGGCGTCAAGATCACCGAGCCGGCGGCCGATCTGGCGG
TGCTGCTGGCGATCCATTCGTCGATGCGTAACAAAGCGTTGCCGAAGGGTCTGATCGTATTCGGCGAAGTGGGGCTGGCC
GGCGAGATCCGGCCGTCGCCGCGCGGCCAGGAGCGCCTGCGCGAGGCCGCCAAGCTGGGCTTCACGATGGCCCTGATTCC
CAAGGCCAACGCGCCCAAGCAGCCGATCGAGGGGCTCACCGTGATGGCCGTCGAGCGCATCGAGCAGGCCATCGACCGCG
TGCGCGGCCTCGAGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-33)

AAA domain (AAA_25)

(78-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.491

100

0.491
  radA Streptococcus pneumoniae Rx1

46.638

100

0.469
  radA Streptococcus pneumoniae D39

46.638

100

0.469
  radA Streptococcus pneumoniae R6

46.638

100

0.469
  radA Streptococcus pneumoniae TIGR4

46.638

100

0.469
  radA Streptococcus mitis SK321

46.943

100

0.469
  radA Streptococcus mitis NCTC 12261

46.608

99.782

0.465

Multiple sequence alignment