Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   SMUNN2025_RS09255 Genome accession   NC_013928
Coordinates   1904541..1905806 (+) Length   421 a.a.
NCBI ID   WP_002287716.1    Uniprot ID   -
Organism   Streptococcus mutans NN2025     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1899541..1910806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNN2025_RS10805 - 1900569..1900913 (+) 345 Protein_1786 helix-turn-helix domain-containing protein -
  SMUNN2025_RS10810 - 1901043..1901132 (-) 90 Protein_1787 LacI family DNA-binding transcriptional regulator -
  SMUNN2025_RS09230 (SmuNN2025_1794) - 1901182..1901925 (-) 744 WP_002285951.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  SMUNN2025_RS09235 (SmuNN2025_1795) prmA 1901926..1902879 (-) 954 WP_002292579.1 50S ribosomal protein L11 methyltransferase -
  SMUNN2025_RS09240 (SmuNN2025_1796) - 1903116..1903412 (-) 297 WP_002268478.1 LlsX family protein -
  SMUNN2025_RS09245 (SmuNN2025_1797) - 1903425..1903895 (-) 471 WP_002283514.1 DUF3013 family protein -
  SMUNN2025_RS09250 (SmuNN2025_1798) - 1904060..1904551 (+) 492 WP_002285953.1 GNAT family N-acetyltransferase -
  SMUNN2025_RS09255 (SmuNN2025_1799) rarA 1904541..1905806 (+) 1266 WP_002287716.1 replication-associated recombination protein A Machinery gene
  SMUNN2025_RS09265 (SmuNN2025_1800) - 1906213..1908129 (-) 1917 WP_002287715.1 heavy metal translocating P-type ATPase -
  SMUNN2025_RS09270 (SmuNN2025_1801) - 1908228..1909022 (+) 795 WP_012997967.1 MerR family transcriptional regulator -
  SMUNN2025_RS09275 (SmuNN2025_1802) - 1909191..1910216 (-) 1026 WP_002266991.1 YeiH family protein -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46398.79 Da        Isoelectric Point: 6.5113

>NTDB_id=32462 SMUNN2025_RS09255 WP_002287716.1 1904541..1905806(+) (rarA) [Streptococcus mutans NN2025]
MPNNLALRMRPRDISEVIGQKHLVGQGKIISRMVTANRLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATTDTKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGQIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKKAMQ
VALTDTERGFDFEVKLDDDALDFIAQATNGDLRSAYNSLDLAIMSTQPDDNGSRHITLDTVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLIEAGDLPSLARRLTIIAYEDIGLANPDAQIHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKAIADLHKSGTIPIPRHLRDGHYAGSKELGNAQDYLYPHAYPEKWVKQQYLPDKLKGANYFTA
NETGKYERALGANKDKIDKLS

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=32462 SMUNN2025_RS09255 WP_002287716.1 1904541..1905806(+) (rarA) [Streptococcus mutans NN2025]
ATGCCAAATAACCTCGCACTTCGTATGCGCCCTCGAGATATCTCTGAAGTTATCGGACAAAAGCATCTAGTCGGTCAAGG
CAAGATTATTTCGCGAATGGTCACTGCTAACCGTCTGTCTTCCATGATTCTTTATGGTCCTCCCGGAATTGGAAAAACCT
CAATCGCTTCTGCCATCGCTGGTACAACCAAATTTGCCTTTCGTACCTTCAATGCAACAACCGACACTAAAAAACGCCTA
CAGGAAATTGCTGAAGAAGCTAAATTTTCAGGTGGTTTGGTTTTACTCCTAGATGAAATTCATCGTCTAGATAAAACTAA
GCAAGATTTTCTTCTCCCCTTGTTGGAAAACGGACAAATTATCATGATTGGCGCAACCACTGAAAATCCCTTTTTCTCTG
TCACCCCTGCCATTCGCTCGCGTGTTCAGATTTTTGAATTAGAGCCATTATCAAATGAGGATATCAAAAAAGCTATGCAA
GTAGCTCTGACAGATACAGAGCGCGGTTTTGATTTTGAAGTCAAATTAGATGATGATGCTCTTGACTTCATTGCGCAAGC
CACCAATGGCGACTTGCGCTCTGCCTATAATTCTCTTGATTTAGCCATCATGTCCACCCAGCCAGATGACAATGGTAGTC
GCCACATCACCTTAGACACTGTTGAAAACAGCCTACAGCGCAGCTACATTACCATGGACAAGGATGGTGATGGCCACTAT
GATGTCTTGTCCGCCTTACAAAAATCTATTCGCGGTTCAGATGTCAATGCCAGCCTTCACTATGCTGCCAGATTAATCGA
AGCTGGTGATCTGCCAAGTCTAGCTAGACGTTTAACCATTATTGCTTACGAAGATATCGGCTTAGCCAATCCTGATGCAC
AGATTCATACAGTGACAGCGCTGGAAGCAGCCCAAAAAATTGGTTTTCCTGAAGCCCGCATTTTAATTGCCAATGTTGTT
ATTGATTTAGCACTCTCACCTAAGTCTAATTCCGCTTATGTTGCTATGGACAAGGCCATTGCAGATCTTCATAAAAGCGG
CACGATCCCTATTCCTCGCCACTTACGTGATGGTCATTACGCTGGCAGTAAAGAATTGGGCAATGCCCAAGATTATCTCT
ACCCGCATGCCTATCCGGAAAAATGGGTTAAGCAGCAATATTTACCAGACAAACTCAAAGGAGCTAACTATTTTACTGCC
AATGAAACAGGTAAATACGAACGGGCACTGGGGGCTAACAAAGACAAGATTGATAAACTTTCATAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-414)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.135

98.812

0.584

Multiple sequence alignment