Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CQP61_RS11035 Genome accession   NZ_CP033635
Coordinates   1739787..1740416 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate ECCNB12-2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1734787..1745416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQP61_RS11015 (CQP61_11020) ycbZ 1735177..1736937 (-) 1761 WP_000156473.1 Lon protease family protein -
  CQP61_RS11020 (CQP61_11025) matP 1737123..1737575 (+) 453 WP_000877166.1 macrodomain Ter protein MatP -
  CQP61_RS11025 (CQP61_11030) ompA 1737651..1738703 (-) 1053 WP_024175778.1 porin OmpA -
  CQP61_RS11030 (CQP61_11035) sulA 1739059..1739568 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CQP61_RS11035 (CQP61_11040) sxy/tfoX 1739787..1740416 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CQP61_RS11040 (CQP61_11045) yccS 1740379..1742541 (-) 2163 WP_000875033.1 YccS family putative transporter -
  CQP61_RS11045 (CQP61_11050) yccF 1742551..1742997 (-) 447 WP_001261235.1 YccF domain-containing protein -
  CQP61_RS11050 (CQP61_11055) helD 1743120..1745174 (+) 2055 WP_012311774.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=324608 CQP61_RS11035 WP_000839153.1 1739787..1740416(+) (sxy/tfoX) [Escherichia coli isolate ECCNB12-2]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=324608 CQP61_RS11035 WP_000839153.1 1739787..1740416(+) (sxy/tfoX) [Escherichia coli isolate ECCNB12-2]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACTGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCTCG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment