Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DTA24_RS18990 Genome accession   NZ_CP033631
Coordinates   3796148..3796744 (-) Length   198 a.a.
NCBI ID   WP_012542296.1    Uniprot ID   A0A1F2LQD1
Organism   Klebsiella sp. P1CD1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3791148..3801744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DTA24_RS18975 (DTA24_19005) helD 3791356..3793410 (-) 2055 WP_012968608.1 DNA helicase IV -
  DTA24_RS18980 (DTA24_19010) - 3793535..3793981 (+) 447 WP_008805896.1 YccF domain-containing protein -
  DTA24_RS18985 (DTA24_19015) yccS 3793999..3796134 (+) 2136 WP_008805895.1 YccS family putative transporter -
  DTA24_RS18990 (DTA24_19020) sxy/tfoX 3796148..3796744 (-) 597 WP_012542296.1 TfoX/Sxy family DNA transformation protein Regulator
  DTA24_RS19000 (DTA24_19030) sulA 3797095..3797604 (+) 510 WP_008805893.1 SOS-induced cell division inhibitor SulA -
  DTA24_RS19005 (DTA24_19035) ompA 3797957..3799009 (+) 1053 WP_008805892.1 porin OmpA -
  DTA24_RS19010 (DTA24_19040) matP 3799120..3799569 (-) 450 WP_049158034.1 macrodomain Ter protein MatP -
  DTA24_RS19015 (DTA24_19045) - 3799755..3801512 (+) 1758 WP_094284866.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22631.12 Da        Isoelectric Point: 10.0610

>NTDB_id=324590 DTA24_RS18990 WP_012542296.1 3796148..3796744(-) (sxy/tfoX) [Klebsiella sp. P1CD1]
MRKLVCPRFPQFQACVSPLGQLHSRPLFGGYSLAIDDTVFAMVAEGDIYLRACEQSAAYRVEHRNPLLTLRRHGRIVPMK
YYQIDDALWRDETQLFRLSLLSWQSAQREKNHRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQQAWQRLRENN
ASLSLNVLLALEGAIVGVHAAALPTLRRQELLEWAGAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=324590 DTA24_RS18990 WP_012542296.1 3796148..3796744(-) (sxy/tfoX) [Klebsiella sp. P1CD1]
ATGAGAAAACTAGTATGTCCGCGGTTCCCGCAATTTCAGGCCTGCGTCTCGCCGCTGGGTCAGTTACATTCTCGTCCGCT
TTTTGGCGGCTATAGCCTGGCCATTGATGATACGGTGTTTGCGATGGTGGCAGAGGGCGATATTTACCTGAGGGCCTGCG
AGCAGAGCGCCGCGTATCGGGTTGAACATCGCAATCCTTTATTAACGCTGCGCCGACATGGGCGCATCGTGCCGATGAAG
TATTATCAAATTGACGACGCATTGTGGCGCGATGAGACTCAGCTTTTTCGGCTGTCGCTGTTGTCGTGGCAGAGTGCGCA
GCGTGAAAAGAACCACCGACGGGCGTCGGGCCGTCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TCCACGCGGGCATACCGGATGTCAGGACGCTTCGGGAGGTAGGCGCTCAGCAGGCCTGGCAACGGCTACGAGAAAACAAC
GCCTCTCTGTCGCTCAACGTCTTGCTGGCGCTGGAGGGGGCGATTGTCGGCGTTCACGCCGCCGCGCTCCCGACGCTGCG
GCGTCAGGAGCTGCTCGAATGGGCTGGAGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1F2LQD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.761

99.495

0.505

Multiple sequence alignment