Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BCAH820_RS06900 Genome accession   NC_011773
Coordinates   1305109..1305432 (-) Length   107 a.a.
NCBI ID   WP_000578878.1    Uniprot ID   A0A6L7H7A6
Organism   Bacillus cereus AH820     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1300109..1310432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCAH820_RS06870 (BCAH820_1365) - 1300409..1301314 (-) 906 WP_131371395.1 IS3 family transposase -
  BCAH820_RS06875 (BCAH820_1366) - 1301284..1301604 (-) 321 WP_000239256.1 helix-turn-helix domain-containing protein -
  BCAH820_RS06880 (BCAH820_1367) sipW 1301861..1302430 (+) 570 WP_000767813.1 signal peptidase I SipW -
  BCAH820_RS06885 (BCAH820_1368) - 1302493..1303080 (+) 588 WP_000172840.1 CalY family protein -
  BCAH820_RS06890 (BCAH820_1369) - 1303242..1304042 (+) 801 WP_000917539.1 DUF4047 domain-containing protein -
  BCAH820_RS06895 (BCAH820_1370) calY 1304440..1305033 (+) 594 WP_000053731.1 biofilm matrix protein CalY -
  BCAH820_RS06900 (BCAH820_1371) sinR 1305109..1305432 (-) 324 WP_000578878.1 helix-turn-helix domain-containing protein Regulator
  BCAH820_RS06905 (BCAH820_1372) - 1305512..1305646 (-) 135 WP_000276214.1 anti-repressor SinI family protein -
  BCAH820_RS06910 (BCAH820_1373) inhA1 1305990..1308377 (+) 2388 WP_001035926.1 M6 family metalloprotease immune inhibitor InhA1 -
  BCAH820_RS06915 (BCAH820_1374) - 1308549..1309916 (+) 1368 WP_000116799.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12319.17 Da        Isoelectric Point: 9.6244

>NTDB_id=32452 BCAH820_RS06900 WP_000578878.1 1305109..1305432(-) (sinR) [Bacillus cereus AH820]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKEANLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=32452 BCAH820_RS06900 WP_000578878.1 1305109..1305432(-) (sinR) [Bacillus cereus AH820]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAGAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAGCTAACCTAGACTCCGAATGGACACAGCTCGTC
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L7H7A6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment