Detailed information    

insolico Bioinformatically predicted

Overview

Name   cipB   Type   Regulator
Locus tag   SMUNN2025_RS07875 Genome accession   NC_013928
Coordinates   1625097..1625327 (-) Length   76 a.a.
NCBI ID   WP_002275977.1    Uniprot ID   Q8DVP7
Organism   Streptococcus mutans NN2025     
Function   indirect induction of ComX; activation of comRS system (predicted from homology)   
Competence regulation

Genomic Context

Location: 1620097..1630327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNN2025_RS07850 (SmuNN2025_1532) - 1620157..1620648 (+) 492 WP_012997911.1 YgjV family protein -
  SMUNN2025_RS07855 (SmuNN2025_1533) - 1620754..1621575 (-) 822 WP_002277959.1 Cof-type HAD-IIB family hydrolase -
  SMUNN2025_RS07860 (SmuNN2025_1534) copZ 1621822..1622025 (-) 204 WP_002264873.1 copper chaperone CopZ -
  SMUNN2025_RS07865 (SmuNN2025_1535) - 1622038..1624266 (-) 2229 WP_002277960.1 heavy metal translocating P-type ATPase -
  SMUNN2025_RS07870 (SmuNN2025_1536) - 1624263..1624706 (-) 444 WP_002277961.1 CopY/TcrY family copper transport repressor -
  SMUNN2025_RS07875 (SmuNN2025_1537) cipB 1625097..1625327 (-) 231 WP_002275977.1 bacteriocin class II family protein Regulator
  SMUNN2025_RS10490 - 1625595..1625822 (+) 228 WP_002287918.1 hypothetical protein -
  SMUNN2025_RS07885 (SmuNN2025_1538) rbfA 1625802..1626155 (-) 354 WP_002274895.1 30S ribosome-binding factor RbfA -
  SMUNN2025_RS07890 (SmuNN2025_1539) infB 1626389..1628611 (-) 2223 Protein_1534 translation initiation factor IF-2 -
  SMUNN2025_RS10795 - 1629044..1629139 (-) 96 Protein_1535 translation initiation factor IF-2 N-terminal domain-containing protein -
  SMUNN2025_RS07895 (SmuNN2025_1540) - 1629160..1629462 (-) 303 WP_002262601.1 YlxQ-related RNA-binding protein -
  SMUNN2025_RS07900 (SmuNN2025_1541) rnpM 1629455..1629751 (-) 297 WP_002263922.1 RNase P modulator RnpM -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 7229.19 Da        Isoelectric Point: 3.7781

>NTDB_id=32449 SMUNN2025_RS07875 WP_002275977.1 1625097..1625327(-) (cipB) [Streptococcus mutans NN2025]
MNTQAFEQFNVMDNEALSTVEGGGMIRCALGTAGSAGLGFVGGMGAGTVTLPVVGTVSGAALGGWSGAAVGAATFC

Nucleotide


Download         Length: 231 bp        

>NTDB_id=32449 SMUNN2025_RS07875 WP_002275977.1 1625097..1625327(-) (cipB) [Streptococcus mutans NN2025]
ATGAATACACAAGCATTTGAACAATTTAACGTAATGGATAATGAAGCACTTTCAACTGTTGAGGGTGGTGGTATGATTAG
ATGTGCACTTGGCACAGCTGGTTCTGCAGGTTTAGGATTTGTAGGGGGTATGGGAGCTGGTACAGTTACTCTCCCAGTCG
TTGGTACAGTATCTGGAGCGGCTTTAGGAGGCTGGTCTGGAGCAGCTGTAGGTGCTGCTACTTTTTGTTGA

Domains

Predicted by InterProScan.

Bacteriocin class II with double-glycine leader peptide (Bacteriocin_IIc)

(6-70)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DVP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cipB Streptococcus mutans UA159

71.429

55.263

0.395

Multiple sequence alignment