Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   FIP52_RS06870 Genome accession   NZ_CP041029
Coordinates   1422533..1423489 (+) Length   318 a.a.
NCBI ID   WP_004916143.1    Uniprot ID   E4TAL4
Organism   Riemerella anatipestifer strain WJ4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1417533..1428489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIP52_RS06840 (FIP52_06840) - 1418002..1418646 (+) 645 WP_038694243.1 DUF4271 domain-containing protein -
  FIP52_RS06845 (FIP52_06845) - 1418668..1419411 (+) 744 WP_014937684.1 uroporphyrinogen-III synthase -
  FIP52_RS06850 (FIP52_06850) - 1419511..1421559 (+) 2049 WP_014937683.1 S9 family peptidase -
  FIP52_RS06855 (FIP52_06855) rpmB 1421831..1422067 (+) 237 WP_004916140.1 50S ribosomal protein L28 -
  FIP52_RS06860 (FIP52_06860) rpmG 1422078..1422260 (+) 183 WP_004916141.1 50S ribosomal protein L33 -
  FIP52_RS06865 (FIP52_06865) - 1422283..1422432 (+) 150 WP_004916142.1 DUF4295 family protein -
  FIP52_RS06870 (FIP52_06870) pilA 1422533..1423489 (+) 957 WP_004916143.1 signal recognition particle-docking protein FtsY Machinery gene
  FIP52_RS06875 (FIP52_06875) - 1423530..1423784 (+) 255 WP_004916144.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  FIP52_RS06880 (FIP52_06880) topA 1423971..1426490 (+) 2520 WP_014937682.1 type I DNA topoisomerase -
  FIP52_RS06885 (FIP52_06885) - 1426502..1427566 (+) 1065 WP_014937681.1 formimidoylglutamase -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 34733.97 Da        Isoelectric Point: 6.0732

>NTDB_id=324451 FIP52_RS06870 WP_004916143.1 1422533..1423489(+) (pilA) [Riemerella anatipestifer strain WJ4]
MSWFKKIFKKEEKETLDRGLEKSSQGFFEKISKAVIGKSKVDDEVLDDLEEVLIASDVGAQTTIKIIERIEDRVARDKYV
GVDELHKLLKEEITALLLENPHADTGNIDEAKKPYVIMVVGVNGVGKTTTIGKLAHQFKTQGKKVVLGAADTFRAAAVDQ
LVIWSERVGVPIVKQNMGSDPASVAFDTVQSAVAQNADVVLIDTAGRLHNKVNLMNELSKIKRVMQKVIPDAPHEVLLVL
DGSTGQNAFEQAKQFTAATEVNALAVTKLDGTAKGGVVIGISDQFQVPVKYIGVGEKMEDLQLFNGTEFVDSLFKKKS

Nucleotide


Download         Length: 957 bp        

>NTDB_id=324451 FIP52_RS06870 WP_004916143.1 1422533..1423489(+) (pilA) [Riemerella anatipestifer strain WJ4]
ATGAGTTGGTTTAAAAAAATATTCAAAAAAGAAGAGAAGGAAACTTTAGATAGAGGGTTAGAAAAGTCAAGTCAAGGCTT
TTTTGAAAAAATATCCAAAGCAGTCATAGGGAAAAGTAAGGTAGATGATGAAGTTTTAGATGATTTGGAAGAGGTTCTTA
TTGCATCAGATGTAGGGGCTCAGACAACTATCAAGATTATCGAACGAATTGAAGATAGAGTTGCTAGGGATAAGTATGTT
GGTGTAGATGAACTACATAAGCTTCTTAAAGAAGAAATTACAGCATTGCTTTTAGAAAATCCTCATGCTGATACGGGGAA
TATAGATGAGGCTAAAAAACCTTACGTAATAATGGTGGTGGGAGTCAATGGAGTAGGTAAAACAACTACGATAGGTAAAT
TAGCACATCAGTTTAAAACACAGGGTAAAAAAGTGGTGCTAGGAGCAGCAGATACTTTTAGAGCGGCGGCGGTGGACCAG
CTGGTGATATGGAGTGAGCGAGTAGGTGTACCTATTGTAAAGCAAAATATGGGTTCTGACCCTGCTTCTGTTGCCTTTGA
TACAGTGCAATCTGCAGTAGCTCAAAATGCAGATGTAGTACTTATAGATACAGCTGGGAGGCTTCATAATAAAGTAAATC
TAATGAATGAATTGTCTAAGATAAAAAGAGTAATGCAGAAAGTAATTCCTGATGCTCCACATGAGGTTTTATTGGTATTA
GACGGTTCTACAGGGCAAAATGCATTTGAACAAGCTAAGCAATTTACTGCTGCAACAGAAGTTAATGCTCTTGCGGTTAC
AAAATTAGATGGTACGGCAAAAGGAGGTGTGGTTATTGGTATTTCTGATCAATTTCAAGTTCCTGTAAAATATATAGGGG
TAGGAGAGAAGATGGAAGACTTGCAGTTATTTAATGGCACGGAGTTTGTTGACTCTCTCTTCAAGAAAAAGAGTTGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(115-314)

SRP54-type protein, helical bundle domain (SRP54_N)

(28-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E4TAL4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

45.515

94.654

0.431