Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   FIU24_RS31170 Genome accession   NZ_CP041013
Coordinates   6426811..6428169 (-) Length   452 a.a.
NCBI ID   WP_014602384.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain FDAARGOS_610     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6421811..6433169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU24_RS31135 (FIU24_31135) thiS 6422045..6422245 (-) 201 WP_003084514.1 sulfur carrier protein ThiS -
  FIU24_RS31140 (FIU24_31140) - 6422348..6422725 (-) 378 WP_003084513.1 DUF423 domain-containing protein -
  FIU24_RS31145 (FIU24_31145) mtgA 6422762..6423493 (+) 732 WP_003100972.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  FIU24_RS31150 (FIU24_31150) - 6423498..6424103 (-) 606 WP_003084511.1 hypothetical protein -
  FIU24_RS31155 (FIU24_31155) rpoH 6424168..6425022 (-) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  FIU24_RS31160 (FIU24_31160) ftsX 6425136..6426143 (-) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  FIU24_RS31165 (FIU24_31165) ftsE 6426143..6426814 (-) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  FIU24_RS31170 (FIU24_31170) pilA 6426811..6428169 (-) 1359 WP_014602384.1 signal recognition particle-docking protein FtsY Machinery gene
  FIU24_RS31175 (FIU24_31175) - 6428290..6429687 (+) 1398 WP_003084498.1 M16 family metallopeptidase -
  FIU24_RS31180 (FIU24_31180) - 6429680..6431167 (+) 1488 WP_003102862.1 M16 family metallopeptidase -
  FIU24_RS31185 (FIU24_31185) rsmD 6431167..6431763 (+) 597 WP_003102864.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  FIU24_RS31190 (FIU24_31190) - 6431766..6432332 (+) 567 WP_003117889.1 hypothetical protein -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 48098.50 Da        Isoelectric Point: 4.5525

>NTDB_id=324424 FIU24_RS31170 WP_014602384.1 6426811..6428169(-) (pilA) [Pseudomonas aeruginosa strain FDAARGOS_610]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPAPV
AEAPLASDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKTSAS
IGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPLQV
DVAREPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDA
VQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLALTK
LDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=324424 FIU24_RS31170 WP_014602384.1 6426811..6428169(-) (pilA) [Pseudomonas aeruginosa strain FDAARGOS_610]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGGCGCCGGTT
GCCGAAGCACCGCTCGCCAGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCAACC
CGAGCCTATCCTGGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGTTGCGCCTCTGGCCGCCG
CTCCGGCAGTCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGACTGTCCAAGACCAGCGCCAGC
ATCGGCGAAGGCATGGCCAGCCTGTTCCTCGGCCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGACGCGCCT
GCTGACCGCCGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGGAGCTGG
CCGACAGCGGCGCGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTGCAGGTC
GACGTCGCGCGCGAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAGCTGGC
GAAGAAGCTGCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCCGTGGAGCAGTTGC
AGGTCTGGGGCGAGCGCAACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATCTTCGACGCG
GTGCAGGCCGCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGACAACCTGAT
GGAGGAGCTGAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGGTGCTCGACG
CCGGCACCGGGCAGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCCCTGACCAAA
CTGGACGGCACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGGTGTCGG
CGAGGGGATCGACGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(162-227)

SRP54-type protein, GTPase domain (SRP54)

(247-446)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.235

96.018

0.454

Multiple sequence alignment