Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   FIU24_RS30985 Genome accession   NZ_CP041013
Coordinates   6395246..6395611 (-) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain FDAARGOS_610     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6390246..6400611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU24_RS30970 (FIU24_30970) pilK 6391590..6392465 (-) 876 WP_004352088.1 type 4 fimbrial methyltransferase PilK -
  FIU24_RS30975 (FIU24_30975) pilJ 6392526..6394574 (-) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  FIU24_RS30980 (FIU24_30980) - 6394659..6395195 (-) 537 WP_003084590.1 chemotaxis protein CheW -
  FIU24_RS30985 (FIU24_30985) pilH 6395246..6395611 (-) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  FIU24_RS30990 (FIU24_30990) pilG 6395658..6396065 (-) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  FIU24_RS30995 (FIU24_30995) gshB 6396320..6397273 (+) 954 WP_003100943.1 glutathione synthase -
  FIU24_RS31000 (FIU24_31000) - 6397420..6398313 (+) 894 WP_003084580.1 TonB family protein -
  FIU24_RS31005 (FIU24_31005) - 6398362..6398931 (+) 570 WP_003100947.1 YqgE/AlgH family protein -
  FIU24_RS31010 (FIU24_31010) ruvX 6398931..6399365 (+) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  FIU24_RS31015 (FIU24_31015) pyrR 6399477..6399989 (+) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=324420 FIU24_RS30985 WP_003084587.1 6395246..6395611(-) (pilH) [Pseudomonas aeruginosa strain FDAARGOS_610]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=324420 FIU24_RS30985 WP_003084587.1 6395246..6395611(-) (pilH) [Pseudomonas aeruginosa strain FDAARGOS_610]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCTATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364