Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | EFV54_RS11665 | Genome accession | NZ_CP033607 |
| Coordinates | 2274264..2274764 (-) | Length | 166 a.a. |
| NCBI ID | WP_003131953.1 | Uniprot ID | - |
| Organism | Lactococcus lactis strain IL1403 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2269264..2279764
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EFV54_RS11640 (EFV54_11640) | gnd | 2270335..2271240 (-) | 906 | WP_031297004.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| EFV54_RS11645 (EFV54_11645) | - | 2271604..2272452 (+) | 849 | WP_010906370.1 | MurR/RpiR family transcriptional regulator | - |
| EFV54_RS11650 (EFV54_11650) | - | 2272490..2272798 (+) | 309 | WP_010906371.1 | DUF960 domain-containing protein | - |
| EFV54_RS11655 (EFV54_11655) | - | 2272872..2273645 (-) | 774 | WP_003131951.1 | metallophosphoesterase | - |
| EFV54_RS11660 (EFV54_11660) | rpsR | 2273845..2274090 (-) | 246 | WP_003131952.1 | 30S ribosomal protein S18 | - |
| EFV54_RS11665 (EFV54_11665) | ssb | 2274264..2274764 (-) | 501 | WP_003131953.1 | single-stranded DNA-binding protein | Machinery gene |
| EFV54_RS11670 (EFV54_11670) | rpsF | 2274794..2275087 (-) | 294 | WP_003131954.1 | 30S ribosomal protein S6 | - |
| EFV54_RS11675 (EFV54_11675) | - | 2275279..2276133 (-) | 855 | WP_010906372.1 | undecaprenyl-diphosphate phosphatase | - |
| EFV54_RS11680 (EFV54_11680) | - | 2276655..2278121 (+) | 1467 | WP_021214997.1 | amino acid permease | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18304.13 Da Isoelectric Point: 5.2279
>NTDB_id=324398 EFV54_RS11665 WP_003131953.1 2274264..2274764(-) (ssb) [Lactococcus lactis strain IL1403]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=324398 EFV54_RS11665 WP_003131953.1 2274264..2274764(-) (ssb) [Lactococcus lactis strain IL1403]
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.465 |
100 |
0.627 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.803 |
100 |
0.602 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.855 |
0.373 |
| ssb | Glaesserella parasuis strain SC1401 |
35.028 |
100 |
0.373 |