Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EEL45_RS05410 Genome accession   NZ_CP033605
Coordinates   1154733..1155362 (+) Length   209 a.a.
NCBI ID   WP_100040735.1    Uniprot ID   -
Organism   Escherichia coli O157:H7 strain TR01     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1149733..1160362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EEL45_RS05390 (EEL45_05390) ycbZ 1150123..1151883 (-) 1761 WP_038340035.1 Lon protease family protein -
  EEL45_RS05395 (EEL45_05395) matP 1152069..1152521 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  EEL45_RS05400 (EEL45_05400) ompA 1152597..1153649 (-) 1053 WP_032223517.1 porin OmpA -
  EEL45_RS05405 (EEL45_05405) sulA 1154006..1154515 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  EEL45_RS05410 (EEL45_05410) sxy/tfoX 1154733..1155362 (+) 630 WP_100040735.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EEL45_RS05415 (EEL45_05415) yccS 1155325..1157487 (-) 2163 WP_000323868.1 YccS family putative transporter -
  EEL45_RS05420 (EEL45_05420) yccF 1157497..1157943 (-) 447 WP_001261235.1 YccF domain-containing protein -
  EEL45_RS05425 (EEL45_05425) helD 1158066..1160120 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24159.07 Da        Isoelectric Point: 9.2180

>NTDB_id=324283 EEL45_RS05410 WP_100040735.1 1154733..1155362(+) (sxy/tfoX) [Escherichia coli O157:H7 strain TR01]
MKSLSYKRIYKSQEYLATLGIIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=324283 EEL45_RS05410 WP_100040735.1 1154733..1155362(+) (sxy/tfoX) [Escherichia coli O157:H7 strain TR01]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCATAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTTCGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTCGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment