Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   EEY85_RS07040 Genome accession   NZ_CP033601
Coordinates   1439520..1441319 (-) Length   599 a.a.
NCBI ID   WP_123171819.1    Uniprot ID   -
Organism   Erysipelothrix rhusiopathiae strain KC-Sb-R1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1434520..1446319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EEY85_RS07015 (EEY85_07015) - 1434879..1435649 (+) 771 WP_123171815.1 PTS sugar transporter subunit IIC -
  EEY85_RS07020 (EEY85_07020) - 1435642..1436460 (+) 819 WP_003775540.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
  EEY85_RS07025 (EEY85_07025) - 1436525..1438402 (+) 1878 WP_123171816.1 BglG family transcription antiterminator -
  EEY85_RS07030 (EEY85_07030) - 1438473..1439075 (+) 603 WP_123171817.1 alpha/beta hydrolase -
  EEY85_RS07035 (EEY85_07035) - 1439072..1439464 (+) 393 WP_123171818.1 CoA-binding protein -
  EEY85_RS07040 (EEY85_07040) pepF 1439520..1441319 (-) 1800 WP_123171819.1 oligoendopeptidase F Regulator
  EEY85_RS07075 (EEY85_07075) - 1442399..1443607 (-) 1209 WP_123171820.1 O-antigen ligase -
  EEY85_RS07080 (EEY85_07080) - 1443697..1444374 (-) 678 WP_003775548.1 hypothetical protein -
  EEY85_RS07085 (EEY85_07085) gatB 1444413..1445828 (-) 1416 WP_123171821.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 68606.38 Da        Isoelectric Point: 4.3664

>NTDB_id=324252 EEY85_RS07040 WP_123171819.1 1439520..1441319(-) (pepF) [Erysipelothrix rhusiopathiae strain KC-Sb-R1]
MSDKYELPLRSEVDIKDTWDLTPMFKDDDAWNTEFDAIQNDLSEVAAYRGTLTKSAESLLAGLKFRDELSYRIEFLYVYA
HLSFDVDTTNPKYQAMNARVQSLLAQFGSSFSFYEAEILSADEAVIREYLESNEALSLYNHEFDRLFKSRPHILSEKEER
ILASSGEIFGVSSQTFGMLNNADIQFPTIKDESGNDVQLSHGRYSLLMESADRRVREDAFKAMQTTYGNLKNTLASTLSG
NVKVHNFNATIRNYASARQAALAANNIDEEVYDSLLEGIHNNINLLHDYVALREEALGIDDIQMYDIYVPMVDEVDLKFT
YEEAQEVILDALSVLGEEYCAVLKRAFDERWIDVVENKGKRSGAYSSGTYGSAPYILLNWQENIDNVFTLAHELGHSVHS
YFTRKYQPYIYGDYSIFVAEVASTTNENLLLNYLLDQYEDPKVRAYLLNHYLDTVKGTVFRQTQFAEFEHLIHKSDQEGI
ALTADYLIESYYKLNQFYYGESISTEEIGYEWARIPHFYYNYYVYQYATGFSAATLFSETIYNGGDATPYLDFLKSGSSD
YPINVLRKAGVDMTESTAVDTTLEKFGERMAELRTLLVK

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=324252 EEY85_RS07040 WP_123171819.1 1439520..1441319(-) (pepF) [Erysipelothrix rhusiopathiae strain KC-Sb-R1]
ATGTCGGATAAATATGAATTACCACTTCGTAGTGAAGTGGATATAAAAGATACATGGGATTTAACACCGATGTTTAAAGA
TGATGACGCATGGAATACAGAATTTGATGCGATTCAAAATGACTTAAGTGAAGTAGCTGCATACCGTGGTACTTTAACGA
AAAGCGCTGAGAGTTTGTTAGCAGGTCTTAAGTTTCGTGATGAATTAAGTTATCGTATTGAGTTTTTATATGTTTATGCA
CATTTAAGTTTTGATGTCGATACCACAAACCCTAAGTATCAAGCAATGAATGCGCGCGTGCAATCGCTTCTTGCGCAATT
TGGATCAAGTTTCTCGTTCTATGAAGCAGAGATTTTATCTGCCGATGAAGCTGTAATTCGAGAATATCTTGAATCGAATG
AAGCACTCAGTTTATATAATCATGAATTTGATCGTCTTTTCAAATCAAGACCACATATTCTTAGTGAAAAAGAAGAGCGT
ATTCTTGCCTCATCAGGAGAAATCTTTGGTGTTTCTTCGCAGACATTTGGCATGTTGAATAATGCAGATATTCAATTCCC
TACAATTAAAGATGAATCGGGAAATGATGTTCAATTATCACACGGTCGTTATTCACTGTTAATGGAAAGTGCAGATCGAC
GTGTTCGTGAAGATGCTTTCAAAGCGATGCAAACAACTTATGGTAATTTAAAGAATACTCTTGCAAGTACGCTGTCGGGA
AATGTTAAGGTTCATAATTTCAATGCAACAATCCGTAATTATGCGTCGGCTCGTCAAGCTGCTCTTGCCGCAAATAATAT
TGACGAAGAAGTTTATGATTCCCTTTTAGAAGGAATTCATAATAATATTAACTTACTGCATGATTATGTAGCCCTTCGTG
AAGAGGCCTTGGGTATTGATGATATTCAAATGTATGATATTTATGTACCTATGGTTGATGAAGTGGATTTGAAGTTTACG
TATGAAGAGGCACAAGAAGTGATCTTGGATGCATTGAGTGTTCTTGGAGAAGAATATTGTGCTGTGTTGAAACGTGCCTT
TGATGAACGCTGGATTGATGTTGTTGAGAATAAAGGGAAACGTTCGGGTGCTTATTCTTCAGGTACTTATGGAAGTGCAC
CGTATATTCTTTTAAACTGGCAAGAAAATATAGATAATGTGTTTACGCTTGCTCATGAGCTTGGACACAGTGTTCACTCA
TACTTTACACGTAAGTATCAACCTTATATTTACGGGGATTATTCTATTTTTGTTGCTGAAGTTGCTTCCACAACGAATGA
GAATTTACTGTTGAATTATTTGTTGGATCAATATGAGGATCCAAAGGTTCGTGCTTACTTGTTGAATCACTATTTAGACA
CGGTTAAAGGCACGGTGTTCCGTCAAACGCAGTTTGCTGAGTTTGAACACCTTATTCATAAATCAGACCAAGAGGGCATT
GCTTTAACGGCTGATTATCTGATTGAGTCTTACTATAAACTCAATCAATTCTATTATGGTGAATCAATTAGCACTGAAGA
AATTGGTTATGAGTGGGCACGCATCCCTCATTTCTACTACAATTACTATGTTTACCAATATGCTACAGGATTTAGTGCAG
CAACTTTATTCAGTGAAACAATTTATAATGGTGGTGATGCGACACCTTATCTTGATTTCTTGAAGTCAGGAAGTTCTGAC
TATCCAATTAATGTCCTTCGTAAGGCAGGCGTGGATATGACTGAATCAACAGCAGTTGATACAACACTCGAGAAATTTGG
CGAACGTATGGCTGAATTACGAACATTACTTGTAAAATAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(206-582)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.241

98.998

0.487

Multiple sequence alignment