Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   EEX22_RS05690 Genome accession   NZ_CP033598
Coordinates   1242110..1243495 (-) Length   461 a.a.
NCBI ID   WP_156732337.1    Uniprot ID   -
Organism   Pasteurella multocida strain CQ7     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1237110..1248495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EEX22_RS05660 (EEX22_05690) - 1237237..1238610 (-) 1374 WP_005722571.1 alanine/glycine:cation symporter family protein -
  EEX22_RS05665 (EEX22_05695) - 1239059..1239328 (-) 270 WP_005722568.1 GNAT family N-acetyltransferase -
  EEX22_RS05670 (EEX22_05700) yacG 1239328..1239531 (-) 204 WP_005719879.1 DNA gyrase inhibitor YacG -
  EEX22_RS05675 (EEX22_05705) coaE 1239542..1240162 (-) 621 WP_005722564.1 dephospho-CoA kinase -
  EEX22_RS05680 (EEX22_05710) - 1240177..1240899 (-) 723 WP_156732335.1 prepilin peptidase -
  EEX22_RS05685 (EEX22_05715) - 1240899..1242110 (-) 1212 WP_156732336.1 type II secretion system F family protein -
  EEX22_RS05690 (EEX22_05720) pilB 1242110..1243495 (-) 1386 WP_156732337.1 GspE/PulE family protein Machinery gene
  EEX22_RS05695 (EEX22_05725) pilA 1243495..1243929 (-) 435 WP_061406215.1 prepilin peptidase-dependent pilin Machinery gene
  EEX22_RS05700 (EEX22_05730) ampD 1244089..1244655 (+) 567 WP_115173563.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  EEX22_RS05705 (EEX22_05735) rppH 1245241..1245837 (+) 597 WP_005722417.1 RNA pyrophosphohydrolase -
  EEX22_RS05710 (EEX22_05740) - 1245840..1246634 (+) 795 WP_005722415.1 sulfite exporter TauE/SafE family protein -
  EEX22_RS05715 (EEX22_05745) lgt 1246644..1247456 (+) 813 WP_156732338.1 prolipoprotein diacylglyceryl transferase -
  EEX22_RS05720 (EEX22_05750) - 1247453..1248304 (+) 852 WP_005751072.1 thymidylate synthase -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52108.74 Da        Isoelectric Point: 6.3686

>NTDB_id=324185 EEX22_RS05690 WP_156732337.1 1242110..1243495(-) (pilB) [Pasteurella multocida strain CQ7]
MFHENPLCTVSAMTGEVFEIQQALWQKNQQQQRFLLRYFALPLQEDEKQLWLGVDSLANLSACDAFSFLTNKHIEPVLLS
TNELKRALQQLSPPKLQVEENIPTVYQVAQLDSDSATDEPLIQLLDQVFERALQLQASDIHFEPQQHSLQVRFRIDGVLQ
VQPSFSGILANRLISRLKLLAKLDISETRLPQDGCFQFKTTFSDTLDFRLSTLPTHLGEKAVLRLQRNKPIHLSFAELGM
TSDQQHRFQHALSQPQGLILVTGPTGSGKSISLYSALAWLNSIEKHILTAEDPIEIALTGIIQTQVNTQIGLDFKRLLRT
FLRQDPDIIMLGEIRDEESALIALRAAQTGHLVLSTLHTNDAPSALTRLQQLGVPLHEIEQSLLLVVAQRLLRRCCDCRV
ETQSACRCYQGYKGRIGVYQFLQKDKTGCFVTDFSSLRESAKEKVRLGMTDDNEVQRVLGE

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=324185 EEX22_RS05690 WP_156732337.1 1242110..1243495(-) (pilB) [Pasteurella multocida strain CQ7]
ATGTTTCATGAGAATCCTTTGTGTACTGTTAGCGCAATGACAGGAGAGGTATTTGAAATCCAACAGGCGCTATGGCAAAA
AAATCAGCAACAACAACGTTTTTTATTACGTTATTTTGCCTTGCCTTTACAAGAAGATGAAAAACAGTTGTGGCTTGGTG
TGGATTCGTTAGCGAATTTATCAGCATGTGATGCCTTTTCTTTTTTAACGAATAAACACATTGAGCCTGTTTTATTATCA
ACAAATGAACTTAAACGGGCATTGCAGCAACTTTCCCCACCAAAATTACAAGTGGAAGAAAACATACCCACGGTTTATCA
AGTCGCGCAATTAGATTCTGATTCCGCGACGGATGAACCTTTGATTCAATTACTTGATCAGGTTTTTGAACGTGCATTAC
AGCTACAGGCTTCTGACATTCATTTTGAACCGCAACAGCATAGCTTACAAGTGCGTTTTAGAATCGATGGTGTATTACAA
GTTCAGCCTTCCTTTTCAGGAATATTGGCTAATCGCCTGATTTCTCGTCTTAAATTATTAGCAAAATTAGATATTAGTGA
AACACGCTTGCCTCAGGACGGTTGTTTCCAATTTAAAACGACATTTTCTGATACATTAGATTTTCGACTTTCTACGTTGC
CGACGCATTTAGGTGAAAAAGCGGTATTACGTTTGCAGCGAAATAAGCCTATTCATCTCAGTTTTGCTGAGTTGGGGATG
ACCTCAGACCAACAACATAGGTTCCAACACGCGTTAAGTCAGCCTCAAGGACTGATTTTAGTAACGGGACCAACAGGGAG
TGGAAAAAGCATTTCGCTTTATAGTGCGCTAGCTTGGCTCAACAGCATAGAAAAGCATATTTTAACAGCAGAAGATCCGA
TTGAAATTGCGTTGACCGGGATAATCCAGACGCAAGTAAATACGCAAATAGGACTGGATTTCAAGCGCTTATTACGCACT
TTTTTACGTCAAGATCCAGACATTATTATGTTAGGGGAAATTCGTGATGAAGAAAGCGCGTTAATCGCATTACGTGCGGC
TCAAACAGGGCATTTAGTCCTCTCTACCTTGCATACGAATGATGCCCCCTCTGCCCTTACTCGCTTACAGCAATTAGGGG
TGCCTTTGCATGAAATTGAACAAAGCCTCTTACTTGTTGTGGCGCAGCGTTTATTGCGTCGTTGTTGTGATTGCCGTGTA
GAGACACAATCGGCGTGTCGTTGCTATCAGGGGTATAAAGGGAGGATTGGGGTATATCAATTTTTACAAAAAGATAAAAC
AGGGTGTTTTGTCACGGATTTTAGTAGTTTACGCGAGAGTGCGAAGGAAAAAGTTCGTTTAGGCATGACCGATGACAATG
AAGTACAACGTGTATTAGGTGAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(19-93)

Type II/IV secretion system protein (T2SSE)

(128-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Haemophilus influenzae 86-028NP

68.212

98.265

0.67
  pilB Haemophilus influenzae Rd KW20

67.55

98.265

0.664
  pilB Glaesserella parasuis strain SC1401

58.811

98.482

0.579
  pilB Acinetobacter baumannii D1279779

39.757

100

0.425
  pilB Vibrio campbellii strain DS40M4

39.419

100

0.412
  pilB Acinetobacter baylyi ADP1

37.876

100

0.41
  pilB Vibrio parahaemolyticus RIMD 2210633

39.293

100

0.41
  pilB Vibrio cholerae strain A1552

38.272

100

0.403
  pilB Legionella pneumophila strain ERS1305867

37.219

100

0.395

Multiple sequence alignment