Detailed information    

insolico Bioinformatically predicted

Overview


Name   braR   Type   Regulator
Locus tag   SMUNN2025_RS05250 Genome accession   NC_013928
Coordinates   1054547..1055218 (-) Length   223 a.a.
NCBI ID   WP_002263237.1    Uniprot ID   Q8DUD1
Organism   Streptococcus mutans NN2025     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1049547..1060218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNN2025_RS05230 (SmuNN2025_1010) - 1050633..1051322 (+) 690 WP_002269136.1 GntR family transcriptional regulator -
  SMUNN2025_RS05235 (SmuNN2025_1011) citG 1051328..1052218 (+) 891 WP_002265082.1 triphosphoribosyl-dephospho-CoA synthase CitG -
  SMUNN2025_RS05240 (SmuNN2025_1012) citC 1052394..1053443 (+) 1050 WP_002278015.1 [citrate (pro-3S)-lyase] ligase -
  SMUNN2025_RS05245 (SmuNN2025_1013) - 1053597..1054550 (-) 954 WP_002263236.1 sensor histidine kinase -
  SMUNN2025_RS05250 (SmuNN2025_1014) braR 1054547..1055218 (-) 672 WP_002263237.1 DNA-binding response regulator Regulator
  SMUNN2025_RS05255 (SmuNN2025_1015) - 1055260..1057263 (-) 2004 WP_002263238.1 ABC transporter permease -
  SMUNN2025_RS05260 (SmuNN2025_1016) - 1057265..1058017 (-) 753 WP_002265085.1 ABC transporter ATP-binding protein -

Sequence


Protein


Download         Length: 223 a.a.        Molecular weight: 25802.90 Da        Isoelectric Point: 5.1691

>NTDB_id=32417 SMUNN2025_RS05250 WP_002263237.1 1054547..1055218(-) (braR) [Streptococcus mutans NN2025]
MLKQEKIYLVEDDTTIVNLLKNHLGQHYQVKSVDNFRAILQEVKEFKPDLILMDITLPYFNGFYWTTEIRKSMTMPIIFI
SSADEEMNAVMAMNMGGDDFLSKPFSLPILDAKIAAFLRRANEFTKQGHQIEEFELTLDGVFSNLERQETIQLTPTETKI
LSLLIDYKGEVVTKEALLNRLWEGEEFIDQNTLSVNMTRLRKKVLSVSFDKIHTVRGVGYLIK

Nucleotide


Download         Length: 672 bp        

>NTDB_id=32417 SMUNN2025_RS05250 WP_002263237.1 1054547..1055218(-) (braR) [Streptococcus mutans NN2025]
ATGCTAAAGCAAGAAAAAATTTACTTGGTTGAAGATGATACAACCATTGTCAATCTTTTAAAGAATCATTTGGGACAACA
CTATCAAGTTAAAAGCGTTGATAACTTTAGGGCTATCTTGCAAGAAGTTAAAGAATTTAAACCCGATTTAATTCTGATGG
ATATTACTTTGCCCTATTTCAATGGCTTTTATTGGACTACTGAAATCAGAAAGAGCATGACCATGCCCATTATTTTTATT
TCCAGTGCTGATGAAGAAATGAATGCAGTAATGGCTATGAATATGGGAGGTGATGATTTTTTGAGCAAGCCTTTCTCGCT
GCCTATTTTGGATGCCAAAATCGCTGCTTTCTTGCGCCGTGCTAACGAGTTCACTAAGCAAGGCCATCAAATTGAAGAGT
TTGAATTAACGTTAGATGGTGTATTCTCAAATTTAGAAAGACAAGAGACTATCCAATTGACTCCAACAGAAACGAAAATT
CTTTCCTTACTTATTGATTATAAAGGAGAGGTTGTCACTAAGGAAGCTCTTCTCAATCGACTATGGGAGGGAGAGGAATT
TATTGATCAAAACACGCTTAGTGTCAATATGACACGTCTTCGTAAAAAGGTTCTATCAGTAAGTTTTGATAAGATTCATA
CAGTAAGAGGAGTAGGGTATTTAATTAAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q8DUD1

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

43.498

100

0.435


Multiple sequence alignment