Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FIU18_RS04160 Genome accession   NZ_CP041008
Coordinates   890037..891479 (+) Length   480 a.a.
NCBI ID   WP_003123272.1    Uniprot ID   Q9HW85
Organism   Pseudomonas aeruginosa strain FDAARGOS_767     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 885037..896479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU18_RS04140 (FIU18_04140) - 885705..887276 (-) 1572 WP_003112782.1 DUF4129 domain-containing protein -
  FIU18_RS04145 (FIU18_04145) - 887263..888243 (-) 981 WP_003112783.1 stage II sporulation protein M -
  FIU18_RS04150 (FIU18_04150) - 888240..889037 (-) 798 WP_003123273.1 RDD family protein -
  FIU18_RS04155 (FIU18_04155) - 889075..889812 (-) 738 WP_003101171.1 hypothetical protein -
  FIU18_RS04160 (FIU18_04160) sbcB 890037..891479 (+) 1443 WP_003123272.1 exodeoxyribonuclease I Machinery gene
  FIU18_RS04165 (FIU18_04165) mvaT 891564..891938 (-) 375 WP_003093888.1 histone-like nucleoid-structuring protein MvaT -
  FIU18_RS04170 (FIU18_04170) purU 892198..893049 (+) 852 WP_003101174.1 formyltetrahydrofolate deformylase -
  FIU18_RS29765 (FIU18_04175) - 893099..893311 (+) 213 Protein_801 hypothetical protein -
  FIU18_RS04180 (FIU18_04180) - 893286..894287 (-) 1002 WP_003093885.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  FIU18_RS04185 (FIU18_04185) - 894284..895045 (-) 762 WP_003112786.1 DUF2334 domain-containing protein -
  FIU18_RS04190 (FIU18_04190) - 895038..896153 (-) 1116 WP_003101181.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 55449.70 Da        Isoelectric Point: 5.4134

>NTDB_id=324156 FIU18_RS04160 WP_003123272.1 890037..891479(+) (sbcB) [Pseudomonas aeruginosa strain FDAARGOS_767]
MTVNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRLAERGLSEADF
MTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLK
LEMLTAANGLEHGQAHDALSDVRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRLLQPLVHVSGRFSAERHFLSVVL
PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPLSVLRAEDRQRTGIE
LDECQQKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQEL
FFRYRARNFPETLNVAERQQWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLPAVLAAWRDYAAELRQRYSLET

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=324156 FIU18_RS04160 WP_003123272.1 890037..891479(+) (sbcB) [Pseudomonas aeruginosa strain FDAARGOS_767]
ATGACCGTGAACGCGAGTATTTTTTGGTACGACTACGAAACCACCGGCATCGACCCTCGCCGCGACCGGCCGTTGCAGAT
CGCCGGGATCCGCACGGACGAGGCGCTGAACGAGATCGGCGAGCCGATGAACCTGTATTGCCGTCCCAGCGACGATATCC
TGCCCCACCCTATGGCTTGCCTGATCACCGGCATCACTCCCCAGCGGCTGGCCGAGCGGGGGCTGTCCGAGGCCGACTTC
ATGACCCGGGTACACGCCCAGCTGGCGCAGCCGGCGACCTGCGTGGCCGGCTACAACTCCCTGCGCTTCGACGACGAAGT
GACGCGCTACAGCCTGTACCGCAACTTCTTCGATCCCTACGCCCGCGAGTGGCAAGGCGGCAATAGCCGCTGGGACCTGA
TCGACATGGTCCGTACCGCCTATGCCCTGCGCCCGGAGGGCATCCAGTGGCCGCAGCTGGACGGCCGGCTGTCGCTGAAG
CTGGAAATGCTCACCGCGGCGAACGGCCTGGAGCATGGGCAGGCCCACGACGCGCTTTCCGATGTCCGCGCCACCATTGC
CCTGGCCCGCCTGATCCGTCAGCGCCAGCCGCGCCTGTACGATTACCTCTACCAGTTGCGCAGCAAGCACAAGGTGCTCG
ACCAGGTGCGCCTGCTGCAGCCGCTGGTGCATGTCTCCGGACGCTTTTCCGCGGAGCGCCATTTCCTCTCGGTGGTCCTG
CCGCTGGCCTGGCACCCGCGCAACCGCAATGCTCTGATCGTCTGCGACCTCTGCGCCGATCCCGCGCCGCTGCTGGAGTT
GTCGGCCGAAGACTTGCGCAGGCGCCTGTATACCCGTCGCGACGAACTGGCCGAGGGCGAGTTGCCGGTGCCGCTGAAGC
AGATCCAGGTCAACCGTTGCCCGGTGGTGGCGCCGCTGTCGGTATTGCGCGCCGAGGATCGCCAGCGAACCGGCATCGAA
CTCGATGAGTGCCAGCAAAAAGCCGAGCTGTTGCGCCAGCATCAAACCGTCTGGGCGGACAAACTGACAGCGCTATATGG
CGAAGAAAGTTTCTCCGCCAGCGACGACCCCGAGCAACAGTTGTATGACGGATTTATTGGCGATCGGGATCGACGCCTTT
GTGAACAGCTGCGCCTTGCCGAACCGGAGCAATTGGCCAAAGAACAATGGCCCTTCGACGATGCCCGTTTGCAGGAGTTG
TTCTTTCGCTATCGTGCGCGAAATTTCCCGGAAACTTTAAATGTGGCCGAGCGCCAACAATGGGAAAGCTTCTGCCGCAA
TCGTTTGTCCCATGAAGAATACGGCGCACCGAATACTTTGCCGGCCTTCGAGGCGGCGCTGGAGGCTTGTCGGCAAGAGC
AGGGCGGCACACTGCCGGCGGTACTTGCGGCCTGGCGCGATTACGCCGCGGAACTGCGTCAACGCTATTCGCTGGAGACT
TGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(9-188)

Exonuclease C-terminal (ExoI_SH3)

(207-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HW85

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

49.412

88.542

0.438