Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   ECB94_RS25325 Genome accession   NZ_CP033578
Coordinates   1735282..1736385 (+) Length   367 a.a.
NCBI ID   WP_206379152.1    Uniprot ID   -
Organism   Vibrio mediterranei strain 117-T6     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1730282..1741385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECB94_RS25295 (ECB94_25355) - 1732057..1732635 (+) 579 WP_124942059.1 SOS response-associated peptidase -
  ECB94_RS25300 (ECB94_25360) - 1732906..1733151 (-) 246 WP_006072803.1 YgjV family protein -
  ECB94_RS25305 (ECB94_25365) - 1733427..1733744 (-) 318 WP_006072802.1 DUF496 family protein -
  ECB94_RS25310 (ECB94_25370) - 1733911..1734150 (+) 240 WP_124942060.1 hypothetical protein -
  ECB94_RS25315 (ECB94_25375) - 1734201..1734860 (+) 660 WP_006072800.1 YceH family protein -
  ECB94_RS25320 (ECB94_25380) - 1734922..1735206 (+) 285 WP_124942061.1 GIY-YIG nuclease family protein -
  ECB94_RS25325 (ECB94_25385) luxP 1735282..1736385 (+) 1104 WP_206379152.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  ECB94_RS25330 (ECB94_25390) luxQ 1736385..1738979 (+) 2595 WP_124942062.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  ECB94_RS25335 (ECB94_25395) - 1739031..1740290 (-) 1260 WP_124942063.1 hydroxymethylglutaryl-CoA reductase -
  ECB94_RS27895 - 1740452..1740613 (-) 162 WP_006072794.1 hypothetical protein -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 41671.80 Da        Isoelectric Point: 5.1345

>NTDB_id=324132 ECB94_RS25325 WP_206379152.1 1735282..1736385(+) (luxP) [Vibrio mediterranei strain 117-T6]
MNRIYSTLLASIIIPFATQSTASEILPGYWDYQEYLRAHPVQEQLTNELSEVVRRQPTPLSVEQNKPVTISVVYPGQQVS
DYWVRNIKAFETRMEELGINYELNQVFTRPNIDLRQQSVSLMEAVKNKSGYLIFTLDTTRHRKFIEHVIHSTDTKLILQN
ITTPVRAWDENPPFLYVGFDHVIGSHLLSDYFKQRFENNHSYSVLYFSEGYVSDARGGTFIQDMEDSGNYQLASSYYTKA
NKESGYKAALSSLRQNPDISFIYACSTDVALGAVDALEQLKRNDIVINGWGGGSAELDAIANNKLDVTVMRMNDDTGVAM
AEAIKWDLEGKPVPTVYSGDFELVTSKDSQSRIDELKKKAFRYSDKS

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=324132 ECB94_RS25325 WP_206379152.1 1735282..1736385(+) (luxP) [Vibrio mediterranei strain 117-T6]
ATGAACAGAATCTATTCAACTTTGCTAGCTTCCATAATCATTCCATTCGCCACTCAGTCGACAGCGAGTGAAATATTGCC
GGGCTATTGGGATTACCAAGAATATCTCCGTGCCCATCCTGTTCAAGAACAGCTTACCAATGAACTTTCCGAGGTTGTTA
GGCGACAGCCAACACCACTCTCTGTCGAGCAAAATAAACCAGTGACAATATCGGTGGTTTACCCCGGTCAACAGGTGTCT
GATTATTGGGTTAGGAACATCAAAGCCTTCGAGACACGTATGGAAGAGCTTGGTATTAACTACGAGCTAAACCAAGTTTT
TACTCGACCTAATATTGATTTGCGACAGCAAAGTGTTTCGCTGATGGAAGCGGTAAAAAACAAGTCCGGTTATTTGATTT
TTACACTAGATACGACACGTCATCGTAAGTTCATTGAGCACGTAATTCATTCAACTGACACCAAGCTCATCTTGCAGAAT
ATCACGACTCCAGTGAGGGCATGGGATGAAAACCCTCCGTTTCTTTATGTTGGTTTTGACCACGTGATTGGCAGTCATCT
ACTCTCAGATTACTTTAAACAGCGCTTTGAAAATAACCATTCCTATTCTGTCTTGTATTTTTCAGAAGGTTACGTTAGCG
ATGCACGTGGCGGTACATTTATCCAAGACATGGAAGACTCGGGTAACTATCAACTCGCTTCATCCTATTACACAAAAGCG
AACAAAGAGAGTGGCTACAAGGCGGCATTGAGTAGCTTGCGACAGAACCCAGACATTAGCTTTATTTATGCTTGCTCAAC
GGACGTAGCTTTAGGCGCAGTTGATGCTCTAGAGCAGCTTAAACGCAATGATATCGTTATTAATGGTTGGGGAGGAGGGT
CTGCCGAACTTGATGCAATCGCTAATAATAAGCTTGATGTAACCGTTATGAGAATGAATGACGACACTGGTGTTGCAATG
GCGGAAGCTATTAAGTGGGATCTTGAAGGAAAGCCCGTACCTACGGTTTATTCCGGTGATTTTGAACTAGTTACCAGTAA
AGATTCGCAATCAAGGATCGACGAATTGAAAAAGAAAGCATTTAGATATTCTGATAAAAGCTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(70-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.789

96.73

0.627

Multiple sequence alignment