Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   ECB94_RS24005 Genome accession   NZ_CP033578
Coordinates   1449380..1450561 (-) Length   393 a.a.
NCBI ID   WP_006070539.1    Uniprot ID   -
Organism   Vibrio mediterranei strain 117-T6     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1444380..1455561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECB94_RS23990 (ECB94_24045) moeA 1445028..1446263 (-) 1236 WP_124941903.1 molybdopterin molybdotransferase MoeA -
  ECB94_RS23995 (ECB94_24050) folE 1446487..1447140 (+) 654 WP_006070541.1 GTP cyclohydrolase I FolE -
  ECB94_RS24000 (ECB94_24055) - 1447286..1449331 (+) 2046 WP_124941904.1 hybrid sensor histidine kinase/response regulator -
  ECB94_RS24005 (ECB94_24060) cqsA 1449380..1450561 (-) 1182 WP_006070539.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  ECB94_RS24010 (ECB94_24065) - 1450783..1451643 (-) 861 WP_006070538.1 TDT family transporter -
  ECB94_RS24015 (ECB94_24070) clcA 1451854..1453254 (-) 1401 WP_006070537.1 H(+)/Cl(-) exchange transporter ClcA -
  ECB94_RS24020 (ECB94_24075) - 1453725..1454711 (+) 987 WP_124941905.1 CobW family GTP-binding protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43551.56 Da        Isoelectric Point: 6.6134

>NTDB_id=324131 ECB94_RS24005 WP_006070539.1 1449380..1450561(-) (cqsA) [Vibrio mediterranei strain 117-T6]
MHLEKITKTLPKFIEQQHDIYIAENIHSTKSKKHLVSGKRPTASDTSYQTNDYLCLNNNAYIKEKHIDAIRANTESMLMS
GVYTAEAEDSSAFEKKLAKLTGFEECVVSQSGYTANLSLLQAICTKDTNVYVDFFAHASLWEGARIAGAMVHPFMHNNIR
HLKRQIQKNGPGIILVDSIYSTLGTIAPLVDLVSMAYEYDCALVVDESHSLGTHGPKGAGLVAELGLTEHVDYITVSLAK
TFAYRAGAILSNKKTAHCLPFVAFPAIFSSMLLPYETERLSATVDVIKSADSARRSLFSNSDYLRNQLRNLGLSIRSESQ
IIALETGDAENTEIVRDFLESKGVFGSIFCTPATPKGKNIIRFSVTSEHTLEDLDRVVQACKEATENKEFYFL

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=324131 ECB94_RS24005 WP_006070539.1 1449380..1450561(-) (cqsA) [Vibrio mediterranei strain 117-T6]
ATGCACTTAGAGAAAATAACAAAAACGTTGCCTAAATTTATTGAACAGCAACACGATATTTATATCGCTGAAAATATCCA
TTCAACCAAAAGTAAAAAGCATCTAGTCTCTGGGAAAAGACCTACGGCAAGTGATACTAGTTACCAAACAAATGACTATC
TATGTCTGAATAACAACGCCTATATTAAGGAGAAGCACATAGACGCTATACGAGCCAATACGGAAAGTATGTTGATGTCT
GGTGTTTATACTGCTGAGGCGGAAGACAGTTCTGCTTTTGAAAAAAAACTCGCTAAACTAACAGGATTTGAAGAGTGTGT
GGTATCACAATCAGGTTATACCGCAAACCTGAGCTTACTACAGGCTATCTGCACGAAAGACACTAATGTGTATGTCGATT
TCTTCGCTCATGCTTCATTATGGGAGGGTGCAAGAATTGCTGGCGCTATGGTTCATCCATTTATGCACAACAATATCAGG
CACTTAAAGCGACAGATTCAAAAGAATGGCCCAGGCATAATTCTAGTTGATTCTATCTACAGTACGTTGGGAACTATAGC
ACCGCTTGTAGACCTGGTATCAATGGCTTATGAGTATGACTGCGCATTGGTCGTGGATGAATCTCATTCACTTGGAACTC
ACGGTCCTAAAGGTGCTGGTTTGGTTGCTGAATTGGGTTTAACTGAGCATGTCGATTATATTACTGTGAGCTTAGCAAAA
ACATTTGCATATCGTGCAGGCGCAATTTTATCCAACAAAAAGACCGCACATTGTCTTCCATTTGTGGCATTCCCTGCAAT
ATTCAGTTCCATGCTACTACCGTATGAAACTGAACGGTTAAGTGCCACTGTCGACGTTATCAAGAGCGCCGACAGTGCAA
GACGCTCGTTGTTCTCAAATAGTGACTATTTAAGAAATCAGCTAAGAAACTTAGGACTATCTATTCGTAGTGAATCTCAG
ATCATCGCTTTGGAAACAGGTGACGCTGAAAACACTGAAATTGTTCGGGATTTCTTAGAGAGTAAAGGCGTTTTTGGTTC
AATCTTTTGTACACCGGCAACGCCAAAAGGAAAAAATATCATCAGATTTTCAGTCACTTCAGAGCATACTCTCGAGGATT
TAGATCGAGTAGTACAAGCATGTAAAGAAGCAACGGAAAACAAAGAATTCTATTTCTTATAG

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(65-380)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

56.136

97.455

0.547

Multiple sequence alignment