Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   ECB94_RS17320 Genome accession   NZ_CP033577
Coordinates   3638610..3640031 (-) Length   473 a.a.
NCBI ID   WP_062460577.1    Uniprot ID   -
Organism   Vibrio mediterranei strain 117-T6     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3633610..3645031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECB94_RS17295 (ECB94_17335) - 3634627..3634983 (+) 357 WP_006072452.1 VOC family protein -
  ECB94_RS17300 (ECB94_17340) purT 3635061..3636236 (-) 1176 WP_006072453.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  ECB94_RS17305 (ECB94_17345) cdd 3636394..3637281 (-) 888 WP_124941139.1 cytidine deaminase -
  ECB94_RS17310 (ECB94_17350) - 3637458..3638144 (-) 687 WP_006072457.1 CidB/LrgB family autolysis modulator -
  ECB94_RS17315 (ECB94_17355) - 3638146..3638511 (-) 366 WP_006072459.1 CidA/LrgA family protein -
  ECB94_RS17320 (ECB94_17360) sbcB 3638610..3640031 (-) 1422 WP_062460577.1 exodeoxyribonuclease I Machinery gene
  ECB94_RS17325 (ECB94_17365) - 3640314..3641687 (+) 1374 WP_124941140.1 Na+/H+ antiporter NhaC family protein -
  ECB94_RS17330 (ECB94_17370) - 3641978..3642571 (+) 594 WP_006072464.1 GNAT family N-acetyltransferase -
  ECB94_RS17335 (ECB94_17375) - 3643000..3643635 (+) 636 WP_124941141.1 alternative oxidase -
  ECB94_RS17340 (ECB94_17380) - 3643807..3644400 (+) 594 WP_096995712.1 DJ-1/PfpI family protein -
  ECB94_RS17345 (ECB94_17385) - 3644397..3644900 (+) 504 WP_006071403.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54508.68 Da        Isoelectric Point: 4.8559

>NTDB_id=324128 ECB94_RS17320 WP_062460577.1 3638610..3640031(-) (sbcB) [Vibrio mediterranei strain 117-T6]
MSQHQPTYFFFDYETWGVSPAKDRPCQFAGVRTDENFNIIGEPLVIYCQPPSDYLPSPEAALITGITPQLCQEKGLSEPE
FIAKIHHELATPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGIEWPENDEGFTS
FKLEHLSVANGIEHENAHDAMADVIATIELAKKVKAAQPKLFDYFYSMRQKRKLNELVDIVNMTPLMHVSGMLGKECQYT
SWVVPIAWHPTNQNAVIVADLAKDPQPLLDLDVDALHQRLYTRHDELAPDEKPVPLKLIHLNKCPILAPAKTLTAENAES
IGIDREQCLKNLALIKQHPEIREKLIGLYSIEREFENDGDVDTQLYSGFFSPADKSAMDIIRETDPNNLSALDISFSDPR
IEPLLFRYRARNFPWSLDETEQARWANHCREFFESRIESYMLNMENLVHEHESDEKKLAILKSVYRYVERLVS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=324128 ECB94_RS17320 WP_062460577.1 3638610..3640031(-) (sbcB) [Vibrio mediterranei strain 117-T6]
ATGTCCCAACACCAACCCACTTATTTCTTTTTCGATTATGAAACATGGGGAGTGAGCCCTGCTAAAGACAGACCTTGTCA
GTTTGCGGGTGTACGGACGGATGAGAACTTTAATATCATTGGTGAGCCATTGGTTATTTACTGCCAGCCACCATCGGACT
ACTTACCTTCTCCCGAAGCAGCATTAATCACAGGTATCACACCACAACTTTGTCAGGAGAAAGGGCTCTCAGAACCAGAG
TTCATTGCTAAGATTCATCACGAACTAGCCACACCAAACACAACAAGCCTTGGTTACAACAGCATTCGTTTTGACGATGA
GGTAACTCGTTATACCTGTTATCGTAACTTCATCGATCCTTACGCATGGAGTTGGCAGAACGGTAACTCACGTTGGGATT
TATTGGATGTTATGCGCGCATGTCACGCACTCCGCCCTGAAGGAATTGAATGGCCGGAGAATGACGAAGGGTTTACCAGT
TTTAAACTTGAACATCTCTCTGTTGCTAATGGTATCGAACACGAAAATGCTCACGATGCCATGGCAGACGTTATTGCAAC
GATAGAACTAGCCAAAAAAGTAAAGGCCGCGCAGCCAAAACTGTTTGACTACTTTTATTCGATGCGTCAAAAGCGAAAAC
TAAACGAACTCGTCGATATCGTGAACATGACACCCTTGATGCATGTATCTGGAATGTTAGGTAAAGAGTGCCAATATACC
AGTTGGGTAGTACCTATCGCGTGGCACCCAACCAATCAAAATGCGGTTATCGTTGCTGATCTGGCCAAAGACCCACAACC
ACTATTAGATTTAGATGTTGATGCATTACATCAGCGCCTATACACCCGACATGATGAACTCGCACCGGACGAAAAACCTG
TCCCGCTTAAACTTATTCATCTCAACAAGTGCCCTATTCTCGCGCCAGCCAAAACGCTCACAGCGGAAAATGCTGAGTCC
ATTGGCATTGACAGAGAGCAGTGTTTGAAGAACCTAGCCCTAATCAAACAACATCCAGAGATCCGTGAGAAACTGATCGG
ACTTTATAGTATTGAGCGCGAGTTTGAGAATGATGGCGACGTAGATACTCAGCTCTACAGCGGCTTTTTCTCGCCAGCAG
ACAAGAGCGCGATGGATATTATTCGCGAAACGGACCCAAACAATCTATCTGCATTAGACATTAGTTTTAGTGATCCTCGT
ATTGAACCGCTGCTATTCAGGTACCGTGCACGCAATTTCCCATGGAGCCTTGATGAAACGGAACAAGCTCGCTGGGCAAA
CCATTGTCGTGAGTTTTTCGAAAGTCGTATTGAAAGCTATATGCTAAATATGGAAAACTTAGTTCACGAACATGAGTCTG
ACGAGAAGAAACTCGCCATACTAAAATCCGTCTACCGCTACGTGGAGCGTCTCGTTTCTTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(209-469)

Exonuclease (RNase_T)

(10-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

78.511

99.366

0.78

Multiple sequence alignment