Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ECB94_RS11075 Genome accession   NZ_CP033577
Coordinates   2305102..2305620 (+) Length   172 a.a.
NCBI ID   WP_124940577.1    Uniprot ID   -
Organism   Vibrio mediterranei strain 117-T6     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2300102..2310620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECB94_RS11065 (ECB94_11085) - 2300445..2303303 (+) 2859 WP_124940575.1 M16 family metallopeptidase -
  ECB94_RS11070 (ECB94_11090) gshA 2303415..2305007 (+) 1593 WP_124940576.1 glutamate--cysteine ligase -
  ECB94_RS11075 (ECB94_11095) luxS 2305102..2305620 (+) 519 WP_124940577.1 S-ribosylhomocysteine lyase Regulator
  ECB94_RS11080 (ECB94_11100) ruvX 2305711..2306136 (-) 426 WP_006075166.1 Holliday junction resolvase RuvX -
  ECB94_RS11085 (ECB94_11105) - 2306179..2306748 (-) 570 WP_031493705.1 YqgE/AlgH family protein -
  ECB94_RS11090 (ECB94_11110) gshB 2306766..2307713 (-) 948 WP_124940578.1 glutathione synthase -
  ECB94_RS11095 (ECB94_11115) rsmE 2307727..2308458 (-) 732 WP_124940579.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  ECB94_RS11100 (ECB94_11120) - 2308539..2309249 (-) 711 WP_031493704.1 endonuclease -
  ECB94_RS11105 (ECB94_11125) - 2309347..2309856 (-) 510 WP_006075171.1 SprT family zinc-dependent metalloprotease -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18952.75 Da        Isoelectric Point: 4.8487

>NTDB_id=324120 ECB94_RS11075 WP_124940577.1 2305102..2305620(+) (luxS) [Vibrio mediterranei strain 117-T6]
MPLLDSFTVDHTKMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRAHLNGDAVEIIDISP
MGCRTGFYMSLIGTPSERQVADAWLSAMQDVLKVESQNKIPELNEYQCGTAAMHSLEEARAIAEAIIAAGIQVNKNDELA
LPESMLQELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=324120 ECB94_RS11075 WP_124940577.1 2305102..2305620(+) (luxS) [Vibrio mediterranei strain 117-T6]
ATGCCACTACTGGATAGCTTCACGGTAGACCACACAAAGATGCACGCGCCAGCCGTACGTGTAGCGAAAACAATGCAAAC
CCCAAAAGGCGACACCATCACGGTGTTTGACTTACGTTTCACGGCGCCAAACAAAGATATCCTTTCTGAGAAAGGCATCC
ACACGCTTGAGCACCTATACGCTGGCTTTATGCGTGCACACCTAAATGGTGATGCTGTTGAAATCATCGATATTTCTCCA
ATGGGCTGCCGTACAGGTTTCTACATGAGCTTAATCGGTACACCTTCAGAGCGACAAGTAGCTGACGCTTGGTTAAGCGC
GATGCAAGACGTTCTGAAAGTAGAAAGCCAGAACAAGATTCCTGAGCTAAATGAGTATCAGTGTGGTACGGCGGCTATGC
ACTCTTTAGAAGAGGCAAGAGCGATTGCGGAAGCGATTATTGCTGCGGGTATTCAAGTAAACAAAAACGACGAACTGGCT
CTGCCAGAGTCAATGCTTCAAGAATTGAAAGTCGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.719

99.419

0.872

Multiple sequence alignment