Detailed information NTG0324110

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: ECB94_RS07785
• Genome accession: NZ_CP033577
• Coordinates: 1663548..1664555 (+)
• Length: 335 a.a.
• NCBI ID: WP_006071173.1
• Uniprot ID: A0A084T383
• Organism: Vibrio mediterranei strain 117-T6
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 1658548..1669555

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ECB94_RS07765 (ECB94_07780)	metJ	1658643..1658963 (+)	321	WP_006071165.1	met regulon transcriptional regulator MetJ	-
ECB94_RS07770 (ECB94_07785)	-	1659027..1660286 (-)	1260	WP_124940369.1	malic enzyme-like NAD(P)-binding protein	-
ECB94_RS07775 (ECB94_07790)	rpmE	1660573..1660791 (-)	219	WP_006071169.1	50S ribosomal protein L31	-
ECB94_RS07780 (ECB94_07795)	priA	1661075..1663276 (+)	2202	WP_124941195.1	primosomal protein N'	-
ECB94_RS07785 (ECB94_07800)	cytR	1663548..1664555 (+)	1008	WP_006071173.1	DNA-binding transcriptional regulator CytR	Regulator
ECB94_RS07790 (ECB94_07805)	-	1664638..1665186 (+)	549	WP_088876323.1	SPOR domain-containing protein	-
ECB94_RS07795 (ECB94_07810)	hslV	1665413..1665946 (+)	534	WP_006071177.1	ATP-dependent protease subunit HslV	-
ECB94_RS07800 (ECB94_07815)	hslU	1665994..1667328 (+)	1335	WP_124940370.1	HslU--HslV peptidase ATPase subunit	-
ECB94_RS07805 (ECB94_07820)	-	1667440..1668357 (+)	918	WP_124940371.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
ECB94_RS07810 (ECB94_07825)	rraA	1668437..1668946 (+)	510	WP_062462553.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36922.56 Da
• Isoelectric Point: 6.1431

>NTDB_id=324110 ECB94_RS07785 WP_006071173.1 1663548..1664555(+) (cytR) [Vibrio mediterranei strain 117-T6]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQSKKRETSFVNLVFTKQADGMLLLGTDLPFDISKPEQKNLPPIVMACEFAPELELPTVHIDN
LTSAFEAVNYLSQLGHKRIAQISGPDTAFLCRFRQQGYQQALRRAGLQMNPAYTVKGDFTFEAGARLIRSLLALPEPPTA
IFCHNDIMAIGAMQEAKKLGLRVPQDLSVVGFDDIQFAQYCDPPLTTVSQPRYEIGRQAMYMMLEVLKGADVRAGSRLLD
TELVIRDSAAPPRIL

Nucleotide

• Length: 1008 bp

>NTDB_id=324110 ECB94_RS07785 WP_006071173.1 1663548..1664555(+) (cytR) [Vibrio mediterranei strain 117-T6]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGCGTCTCAACGGCTACGGTATCAAGAGCATTGATGAATCCCGAGAA
GGTCTCATCATCTACTCGAAAGCGAGTCGAAGATGCCGTTCTCGAAGCTGGCTATTCTCCTAATTCTCTGGCGCGTAACT
TACGTAGGAATGAATCCAAGACGATCGTTACCATAGTGCCAGACATCTGTGACCCGTACTTTTCGGAAATCATTCGTGGT
ATCGAAGATGCGGCAATGGAACATGGGTATTTGGTTCTACTAGGAGATAGCGGACAATCGAAAAAGCGTGAAACCTCGTT
TGTGAACTTGGTCTTCACTAAGCAAGCGGATGGCATGCTTTTACTCGGCACCGACTTGCCTTTTGATATCAGTAAGCCAG
AACAGAAAAACTTACCTCCCATCGTTATGGCCTGTGAGTTTGCCCCTGAACTTGAGCTCCCTACCGTTCATATCGACAAC
CTGACCTCAGCCTTTGAAGCAGTAAACTATTTGTCGCAATTGGGACATAAGCGTATCGCACAGATTTCAGGACCTGACAC
CGCATTTTTATGCCGTTTTAGACAGCAAGGTTACCAGCAAGCGTTGCGAAGAGCCGGACTGCAAATGAACCCTGCGTACA
CAGTGAAAGGTGACTTTACCTTTGAAGCGGGTGCACGTTTGATTCGCAGCCTACTTGCCCTGCCGGAGCCTCCAACAGCC
ATTTTCTGTCATAACGACATCATGGCCATTGGCGCGATGCAAGAAGCGAAGAAACTGGGACTGCGAGTTCCTCAAGATCT
TTCCGTAGTTGGTTTCGATGACATTCAGTTCGCTCAGTATTGCGATCCTCCGCTTACCACAGTCTCACAACCTCGTTATG
AGATTGGCCGCCAAGCCATGTACATGATGTTAGAAGTACTGAAAGGTGCCGATGTTCGAGCGGGATCGAGGTTACTTGAT
ACTGAACTTGTGATCCGCGACAGTGCTGCTCCTCCAAGAATCCTATAG

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

3D structure

• AlphaFold DB: A0A084T383

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	89.157	99.104	0.884
cytR	Vibrio parahaemolyticus RIMD 2210633	87.988	99.403	0.875