Detailed information NTG0324101

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ECB94_RS06515
• Genome accession: NZ_CP033577
• Coordinates: 1410277..1411254 (-)
• Length: 325 a.a.
• NCBI ID: WP_006072644.1
• Uniprot ID: -
• Organism: Vibrio mediterranei strain 117-T6
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1405277..1416254

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ECB94_RS06495 (ECB94_06505)	-	1405579..1407096 (-)	1518	WP_006072653.1	inorganic triphosphatase	-
ECB94_RS06500 (ECB94_06510)	-	1407302..1407982 (+)	681	WP_038222611.1	TIGR00153 family protein	-
ECB94_RS06505 (ECB94_06515)	-	1408107..1409369 (+)	1263	WP_038224033.1	inorganic phosphate transporter	-
ECB94_RS06510 (ECB94_06520)	-	1409591..1410202 (+)	612	WP_006072646.1	TIGR04211 family SH3 domain-containing protein	-
ECB94_RS06515 (ECB94_06525)	rpoS	1410277..1411254 (-)	978	WP_006072644.1	RNA polymerase sigma factor RpoS	Regulator
ECB94_RS06520 (ECB94_06530)	nlpD	1411370..1412326 (-)	957	WP_124940255.1	murein hydrolase activator NlpD	-
ECB94_RS06525 (ECB94_06535)	-	1412327..1412950 (-)	624	WP_124940256.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ECB94_RS06530 (ECB94_06540)	surE	1412955..1413719 (-)	765	WP_006072638.1	5'/3'-nucleotidase SurE	-
ECB94_RS06535 (ECB94_06545)	truD	1413724..1414701 (-)	978	WP_006072637.1	tRNA pseudouridine(13) synthase TruD	-
ECB94_RS06540 (ECB94_06550)	ispF	1414714..1415193 (-)	480	WP_006072635.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ECB94_RS06545 (ECB94_06555)	ispD	1415190..1415900 (-)	711	WP_006072633.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ECB94_RS06550 (ECB94_06560)	ftsB	1415897..1416178 (-)	282	WP_006072631.1	cell division protein FtsB	-

Sequence

Protein

• Length: 325 a.a.
• Molecular weight: 37188.02 Da
• Isoelectric Point: 4.6733

>NTDB_id=324101 ECB94_RS06515 WP_006072644.1 1410277..1411254(-) (rpoS) [Vibrio mediterranei strain 117-T6]
MSISNAVTKNENFDVETESTEIVENALTNDESISEDKDMYDASAKSLDATQLYLGEIGFSPLLTAEEEVLYARRALKGDE
AARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLP
IHVVKELNIYLRTARELSQKLDHEPTAEEIAQKLDKPVSDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDSTHSDPEV
STQDDDIKSSLIHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLRDILIKQGLNMESLF
NFDDD

Nucleotide

• Length: 978 bp

>NTDB_id=324101 ECB94_RS06515 WP_006072644.1 1410277..1411254(-) (rpoS) [Vibrio mediterranei strain 117-T6]
ATGAGTATCAGCAATGCAGTAACCAAAAATGAAAACTTCGACGTTGAAACGGAATCAACGGAGATCGTCGAAAACGCACT
TACCAACGATGAATCCATTTCTGAAGATAAAGATATGTATGACGCATCGGCGAAAAGCCTAGATGCGACTCAGCTTTACT
TAGGCGAAATTGGTTTCTCTCCATTACTTACCGCGGAAGAAGAAGTCCTGTATGCGCGACGTGCCTTAAAGGGTGACGAA
GCCGCTCGTAAACGTATGATCGAAAGTAACCTACGCTTGGTAGTGAAGATCTCTCGACGTTACAGCAATCGTGGACTGGC
GCTGCTTGATCTTATTGAGGAAGGAAACCTTGGTTTGATTCGAGCAGTCGAAAAGTTTGACCCAGAACGAGGCTTCCGTT
TTTCTACTTATGCCACATGGTGGATTCGACAAACGATTGAACGTGCGTTAATGAACCAGACTCGCACCATTCGTCTTCCG
ATTCATGTAGTGAAAGAACTCAATATCTATTTGCGTACTGCTCGTGAGTTATCACAGAAGCTAGACCATGAGCCTACAGC
AGAAGAGATTGCACAGAAGCTTGATAAGCCAGTCAGTGATGTGTCTAAGATGCTACGTCTAAATGAACGTATTAGCTCAG
TAGATACACCGATTGGCGGTGATGGTGAAAAAGCACTCCTAGATATTATTCCTGACTCAACGCATTCAGATCCTGAAGTA
TCGACTCAAGATGATGATATCAAGTCTTCGCTGATTCACTGGCTTGACGAGCTAAACCCTAAGCAGAAAGAAGTACTAGC
ACGACGTTTCGGTCTGCTCGGCTATGAGCCATCGACACTAGAAGAAGTAGGACGTGAGATTAATCTGACCCGTGAACGCG
TGAGACAGATTCAAGTTGAAGGCTTACGTCGACTTCGCGATATCCTGATCAAACAAGGGTTGAATATGGAGTCACTGTTC
AATTTCGATGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (48-81)

• Sigma-70, region 4 (Sigma70_r4) (254-306)

• Sigma-70 region 2 (Sigma70_r2) (86-155)

• Sigma-70 region 3 (Sigma70_r3) (166-239)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.862