Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   FIU16_RS18555 Genome accession   NZ_CP041002
Coordinates   3570016..3570492 (+) Length   158 a.a.
NCBI ID   WP_001388380.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_772     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3565016..3575492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU16_RS18525 (FIU16_18525) - 3567540..3567995 (+) 456 WP_000581502.1 IrmA family protein -
  FIU16_RS18530 (FIU16_18530) - 3568074..3568307 (+) 234 WP_001119729.1 DUF905 family protein -
  FIU16_RS18540 (FIU16_18540) - 3568407..3569225 (+) 819 WP_001234603.1 DUF932 domain-containing protein -
  FIU16_RS18550 (FIU16_18550) - 3569527..3570000 (+) 474 WP_000855081.1 antirestriction protein -
  FIU16_RS18555 (FIU16_18555) radC 3570016..3570492 (+) 477 WP_001388380.1 RadC family protein Machinery gene
  FIU16_RS18560 (FIU16_18560) - 3570579..3570800 (+) 222 WP_000692350.1 DUF987 domain-containing protein -
  FIU16_RS18565 (FIU16_18565) - 3570880..3571257 (+) 378 WP_001285616.1 type IV toxin-antitoxin system YeeU family antitoxin -
  FIU16_RS18570 (FIU16_18570) - 3571304..3571681 (+) 378 WP_001094429.1 TA system toxin CbtA family protein -
  FIU16_RS18575 (FIU16_18575) - 3571678..3571875 (+) 198 Protein_3490 DUF5983 family protein -
  FIU16_RS18580 (FIU16_18580) - 3571903..3572100 (+) 198 WP_085949090.1 DUF957 domain-containing protein -
  FIU16_RS18585 (FIU16_18585) - 3572185..3573027 (+) 843 WP_001280493.1 DUF4942 domain-containing protein -
  FIU16_RS18590 (FIU16_18590) yghD 3573308..3573844 (-) 537 WP_000942795.1 GspM family type II secretion system protein YghD -
  FIU16_RS18595 (FIU16_18595) gspL 3573846..3575024 (-) 1179 WP_000094962.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17652.26 Da        Isoelectric Point: 6.9859

>NTDB_id=324092 FIU16_RS18555 WP_001388380.1 3570016..3570492(+) (radC) [Escherichia coli strain FDAARGOS_772]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVPPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=324092 FIU16_RS18555 WP_001388380.1 3570016..3570492(+) (radC) [Escherichia coli strain FDAARGOS_772]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACACCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCCCCCCCAGCAAGGCAGACCGCCTTATCACTGAGCGTCTGGTACAGGCACTGGCCCTGG
TTGATATCCGGGTACCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392

Multiple sequence alignment