Detailed information NTG0324088

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FIU16_RS16845
• Genome accession: NZ_CP041002
• Coordinates: 3229819..3230811 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain FDAARGOS_772
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3224819..3235811

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FIU16_RS16820 (FIU16_16820)	ygbN	3225473..3226837 (+)	1365	WP_000104428.1	GntP family transporter	-
FIU16_RS16825 (FIU16_16825)	-	3226877..3227113 (-)	237	WP_000562990.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
FIU16_RS16830 (FIU16_16830)	-	3227124..3228551 (-)	1428	WP_000863197.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
FIU16_RS16835 (FIU16_16835)	-	3228551..3229144 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
FIU16_RS16840 (FIU16_16840)	-	3229291..3229698 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
FIU16_RS16845 (FIU16_16845)	rpoS	3229819..3230811 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
FIU16_RS16850 (FIU16_16850)	nlpD	3230874..3231968 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
FIU16_RS16855 (FIU16_16855)	pcm	3232153..3232779 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FIU16_RS16860 (FIU16_16860)	surE	3232773..3233534 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
FIU16_RS16865 (FIU16_16865)	truD	3233515..3234564 (-)	1050	WP_000568956.1	tRNA pseudouridine(13) synthase TruD	-
FIU16_RS16870 (FIU16_16870)	ispF	3234561..3235040 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FIU16_RS16875 (FIU16_16875)	ispD	3235040..3235750 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=324088 FIU16_RS16845 WP_000081550.1 3229819..3230811(-) (rpoS) [Escherichia coli strain FDAARGOS_772]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=324088 FIU16_RS16845 WP_000081550.1 3229819..3230811(-) (rpoS) [Escherichia coli strain FDAARGOS_772]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715