Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EEB07_RS17420 Genome accession   NZ_CP033576
Coordinates   3362556..3362840 (+) Length   94 a.a.
NCBI ID   WP_123117786.1    Uniprot ID   -
Organism   Bacillus velezensis strain NY12-2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3357556..3367840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EEB07_RS17395 (EEB07_17395) - 3358799..3359707 (+) 909 WP_025649506.1 ketopantoate reductase family protein -
  EEB07_RS17400 (EEB07_17400) - 3359739..3360971 (-) 1233 WP_007409644.1 aminopeptidase -
  EEB07_RS17405 (EEB07_17405) - 3361072..3361206 (-) 135 WP_003154559.1 protein YkpC -
  EEB07_RS17410 (EEB07_17410) mreBH 3361278..3362285 (-) 1008 WP_014417632.1 cell shape-determining protein MreBH -
  EEB07_RS17420 (EEB07_17420) abrB 3362556..3362840 (+) 285 WP_123117786.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  EEB07_RS17425 (EEB07_17425) - 3363013..3364317 (+) 1305 WP_014417634.1 ATP-binding protein -
  EEB07_RS17430 (EEB07_17430) - 3364319..3365146 (+) 828 WP_014417635.1 gamma-glutamylcyclotransferase family protein -
  EEB07_RS17435 (EEB07_17435) ktrC 3365187..3365852 (+) 666 WP_100261756.1 Ktr system potassium transporter KtrC -
  EEB07_RS17440 (EEB07_17440) ade 3366001..3367734 (+) 1734 WP_123117787.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=324087 EEB07_RS17420 WP_123117786.1 3362556..3362840(+) (abrB) [Bacillus velezensis strain NY12-2]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYDNGKIILSPEGAK
MLLEEIEEALKGRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=324087 EEB07_RS17420 WP_123117786.1 3362556..3362840(+) (abrB) [Bacillus velezensis strain NY12-2]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACCTCCGAAAATCAGGAGTACGACAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGGTAGATCATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(54-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment