Detailed information NTG0324057

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: EEB07_RS09920
• Genome accession: NZ_CP033576
• Coordinates: 1907886..1908998 (+)
• Length: 370 a.a.
• NCBI ID: WP_007409910.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain NY12-2
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1902886..1913998

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EEB07_RS09895 (EEB07_09895)	rnpA	1903599..1903949 (-)	351	WP_004392944.1	ribonuclease P protein component	-
EEB07_RS09900 (EEB07_09900)	rpmH	1904103..1904237 (-)	135	WP_003178075.1	50S ribosomal protein L34	-
EEB07_RS09905 (EEB07_09905)	dnaA	1904859..1906199 (+)	1341	WP_004392913.1	chromosomal replication initiator protein DnaA	-
EEB07_RS09910 (EEB07_09910)	dnaN	1906384..1907520 (+)	1137	WP_007409909.1	DNA polymerase III subunit beta	-
EEB07_RS09915 (EEB07_09915)	rlbA	1907655..1907870 (+)	216	WP_004392910.1	ribosome maturation protein RlbA	-
EEB07_RS09920 (EEB07_09920)	recF	1907886..1908998 (+)	1113	WP_007409910.1	DNA replication/repair protein RecF	Machinery gene
EEB07_RS09925 (EEB07_09925)	-	1909016..1909261 (+)	246	WP_004392908.1	extracellular matrix/biofilm biosynthesis regulator RemA family protein	-
EEB07_RS09930 (EEB07_09930)	gyrB	1909318..1911234 (+)	1917	WP_014720600.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
EEB07_RS09935 (EEB07_09935)	gyrA	1911450..1913909 (+)	2460	WP_025650119.1	DNA gyrase subunit A	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42430.36 Da
• Isoelectric Point: 7.0882

>NTDB_id=324057 EEB07_RS09920 WP_007409910.1 1907886..1908998(+) (recF) [Bacillus velezensis strain NY12-2]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGTLVK

Nucleotide

• Length: 1113 bp

>NTDB_id=324057 EEB07_RS09920 WP_007409910.1 1907886..1908998(+) (recF) [Bacillus velezensis strain NY12-2]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAAGGCAAAACCAATCTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAATCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGCAACGGGGAC
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCCGAGGATTTAAATCTCGTCAAAGGAAGCCCTCAGGTGAGGAGGAGAT
TTCTCGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACCATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCAAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCACAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAAGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACGTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAGCTGGCCGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACAAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTACGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (2-348)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	94.324	100	0.943