Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BCG9842_RS09530 Genome accession   NC_011772
Coordinates   1892101..1892388 (+) Length   95 a.a.
NCBI ID   WP_000648324.1    Uniprot ID   -
Organism   Bacillus cereus G9842     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1887101..1897388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCG9842_RS09510 (BCG9842_B3311) - 1887367..1887588 (+) 222 WP_000799108.1 hypothetical protein -
  BCG9842_RS09515 (BCG9842_B3310) - 1887681..1889186 (+) 1506 WP_000804004.1 recombinase family protein -
  BCG9842_RS09520 (BCG9842_B3309) - 1889378..1889890 (-) 513 WP_000431420.1 hypothetical protein -
  BCG9842_RS09525 (BCG9842_B3308) - 1890105..1891985 (+) 1881 WP_001025994.1 ABC transporter permease -
  BCG9842_RS09530 (BCG9842_B3307) abrB 1892101..1892388 (+) 288 WP_000648324.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BCG9842_RS09535 (BCG9842_B3306) - 1892664..1893611 (+) 948 WP_000099758.1 serine protease -
  BCG9842_RS09540 (BCG9842_B3305) - 1893651..1893959 (-) 309 WP_001259903.1 ArsR/SmtB family transcription factor -
  BCG9842_RS09545 (BCG9842_B3304) - 1894066..1895001 (+) 936 WP_000877949.1 aldo/keto reductase -
  BCG9842_RS09550 (BCG9842_B3303) - 1895049..1896224 (+) 1176 WP_001082501.1 MFS transporter -
  BCG9842_RS09555 (BCG9842_B3302) - 1896544..1896768 (-) 225 WP_000162602.1 hypothetical protein -
  BCG9842_RS09560 (BCG9842_B3301) - 1896853..1897200 (-) 348 WP_000426317.1 DUF4257 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10587.32 Da        Isoelectric Point: 4.8408

>NTDB_id=32404 BCG9842_RS09530 WP_000648324.1 1892101..1892388(+) (abrB) [Bacillus cereus G9842]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSEQNISLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=32404 BCG9842_RS09530 WP_000648324.1 1892101..1892388(+) (abrB) [Bacillus cereus G9842]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTGCAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGAACAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526

Multiple sequence alignment