Detailed information NTG0323984

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EEL44_RS18700
• Genome accession: NZ_CP033515
• Coordinates: 2625038..2626045 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116737.1
• Uniprot ID: O51804
• Organism: Vibrio cholerae strain E4
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2620038..2631045

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EEL44_RS18690 (EEL44_18690)	cysM	2621202..2622089 (+)	888	WP_001279365.1	cysteine synthase CysM	-
EEL44_RS18695 (EEL44_18695)	mutS	2622357..2624945 (+)	2589	WP_001894770.1	DNA mismatch repair protein MutS	-
EEL44_RS18700 (EEL44_18700)	rpoS	2625038..2626045 (-)	1008	WP_000116737.1	RNA polymerase sigma factor RpoS	Regulator
EEL44_RS18705 (EEL44_18705)	nlpD	2626119..2627054 (-)	936	WP_000177568.1	murein hydrolase activator NlpD	-
EEL44_RS18710 (EEL44_18710)	-	2627054..2627680 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
EEL44_RS18715 (EEL44_18715)	surE	2627673..2628425 (-)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
EEL44_RS18720 (EEL44_18720)	truD	2628427..2629512 (-)	1086	WP_000129752.1	tRNA pseudouridine(13) synthase TruD	-
EEL44_RS18725 (EEL44_18725)	ispF	2629542..2630018 (-)	477	WP_000619209.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EEL44_RS18730 (EEL44_18730)	ispD	2630015..2630713 (-)	699	WP_001061951.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
EEL44_RS18735 (EEL44_18735)	ftsB	2630710..2630994 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38534.39 Da
• Isoelectric Point: 4.3648

>NTDB_id=323984 EEL44_RS18700 WP_000116737.1 2625038..2626045(-) (rpoS) [Vibrio cholerae strain E4]
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=323984 EEL44_RS18700 WP_000116737.1 2625038..2626045(-) (rpoS) [Vibrio cholerae strain E4]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

3D structure

• AlphaFold DB: O51804

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	100	100	1