Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   FIU14_RS00845 Genome accession   NZ_CP040998
Coordinates   160004..161683 (+) Length   559 a.a.
NCBI ID   WP_001836254.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDAARGOS_773     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 155004..166683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU14_RS00815 (FIU14_00815) - 155857..156219 (+) 363 WP_000241588.1 Asp23/Gls24 family envelope stress response protein -
  FIU14_RS00820 (FIU14_00820) nusB 156279..156668 (+) 390 WP_000087385.1 transcription antitermination factor NusB -
  FIU14_RS00825 (FIU14_00825) xseA 156685..158022 (+) 1338 WP_001286928.1 exodeoxyribonuclease VII large subunit -
  FIU14_RS00830 (FIU14_00830) - 158015..158245 (+) 231 WP_000159865.1 exodeoxyribonuclease VII small subunit -
  FIU14_RS00835 (FIU14_00835) - 158223..159104 (+) 882 WP_000183378.1 polyprenyl synthetase family protein -
  FIU14_RS00840 (FIU14_00840) ahrC 159536..159988 (+) 453 WP_001124985.1 transcriptional regulator AhrC/ArgR -
  FIU14_RS00845 (FIU14_00845) recN 160004..161683 (+) 1680 WP_001836254.1 DNA repair protein RecN Machinery gene
  FIU14_RS00850 (FIU14_00850) lpdA 161834..163255 (+) 1422 WP_001291535.1 dihydrolipoyl dehydrogenase -
  FIU14_RS00855 (FIU14_00855) - 163271..164263 (+) 993 WP_000568353.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  FIU14_RS00860 (FIU14_00860) - 164263..165246 (+) 984 WP_001096642.1 alpha-ketoacid dehydrogenase subunit beta -
  FIU14_RS00865 (FIU14_00865) - 165259..166533 (+) 1275 WP_000406843.1 dihydrolipoamide acetyltransferase family protein -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 64321.91 Da        Isoelectric Point: 4.7013

>NTDB_id=323976 FIU14_RS00845 WP_001836254.1 160004..161683(+) (recN) [Staphylococcus aureus strain FDAARGOS_773]
MLQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQLIGMRASSDFVRHGEKKAVIEGIFDIDESKDAIHIL
KNMDIDVDEDFLLVKREIFSSGKSLCKINNQTVTLQDLRKVMQELLDIHGQHETQSLLKQKYHLTLLDNYAESRYQDLLD
KYHQTFQNYKAKKQELEDIESADQALLQRLDLMKFQLEELSEAHLKEGEIEQLEIDIKRIQNSEKLSLALNNAYMTLTDE
NAITDRLYELSNHLLTINDIVPNKYDKLKEDIDQFYYILEDAKHELYDEMANTEFDEQVLNEYESRMNLLNNLKRKYGKD
ISELIAYQEKLNNEINKIENYEQSTSQLREEINALYNQVIEVGQALSKQRRIVARELRDHIVSEIQNLQMKDANLEISFK
KLEEPNIDGIEFVEFLISPNKGEPLKSLNKIASGGELSRIMLALKSIFVKSRGQTAILFDEVDSGVSGQAAQKMAEKMRD
IAEYIQVICISHLPQVASMSDHHLLISKSSKDDRTTTQVQELISDDKVDEIARMISGASVTDLTRENAREMIQHNQRRR

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=323976 FIU14_RS00845 WP_001836254.1 160004..161683(+) (recN) [Staphylococcus aureus strain FDAARGOS_773]
ATGTTACAAACCTTATCAATCAAGCAATTTGCTATTATTGAAGAATTAGAAATTCAATTTTCTGATGGTTTAACTGTTTT
AAGTGGTGAAACGGGTTCAGGTAAGTCAATTATTATAGATGCAATTGGACAATTAATTGGAATGAGAGCTTCATCTGATT
TTGTAAGACATGGTGAAAAAAAGGCTGTCATCGAAGGTATATTTGATATTGACGAGAGTAAAGATGCTATACATATATTG
AAAAATATGGATATTGATGTAGATGAAGATTTTTTATTAGTTAAACGGGAAATTTTCAGCTCTGGTAAAAGTCTTTGTAA
AATTAATAATCAAACAGTTACTTTACAAGATTTACGAAAAGTTATGCAAGAATTATTAGATATTCATGGCCAACATGAAA
CGCAGTCTTTGTTGAAACAAAAATACCATTTAACATTATTGGATAATTACGCAGAATCACGTTATCAAGATTTGTTGGAT
AAATATCACCAAACTTTTCAAAATTATAAAGCCAAAAAGCAAGAGTTAGAAGATATAGAATCAGCAGACCAAGCATTGCT
ACAGCGTTTAGATTTAATGAAATTCCAATTAGAAGAATTGTCTGAAGCACATCTAAAAGAAGGCGAAATAGAGCAACTTG
AAATAGATATTAAACGCATTCAAAACTCTGAAAAATTAAGCTTAGCGCTTAATAACGCATATATGACATTAACGGATGAA
AATGCTATCACTGATCGTTTATATGAACTAAGCAACCATTTGTTAACAATAAACGATATAGTTCCAAACAAATATGACAA
ATTAAAAGAAGATATTGATCAATTTTACTACATTTTAGAAGATGCAAAACATGAGTTATATGATGAAATGGCTAATACAG
AATTCGACGAACAAGTGTTAAACGAGTATGAATCTCGTATGAATTTGCTGAATAATTTAAAACGTAAATATGGAAAAGAT
ATTTCAGAATTAATCGCATATCAAGAAAAGCTTAATAATGAAATCAATAAAATTGAAAACTATGAACAAAGTACATCGCA
GTTACGAGAAGAAATAAATGCATTGTATAATCAAGTTATAGAGGTTGGACAAGCGTTATCAAAGCAGCGTCGTATAGTCG
CTAGGGAGTTAAGAGACCACATTGTATCGGAAATTCAAAACTTACAAATGAAAGACGCAAATCTTGAGATTTCATTTAAA
AAATTAGAAGAACCGAATATTGATGGAATCGAATTTGTAGAATTTTTAATCAGTCCAAATAAAGGGGAACCATTAAAAAG
TTTAAATAAAATTGCGTCAGGTGGAGAACTTTCTAGAATTATGTTAGCGTTAAAAAGTATTTTTGTTAAATCGAGAGGTC
AAACTGCAATTTTATTCGATGAGGTTGACTCAGGTGTATCTGGACAAGCTGCACAAAAAATGGCAGAGAAAATGCGAGAT
ATAGCAGAATATATACAAGTTATTTGTATCTCTCACTTACCACAAGTTGCATCGATGAGCGACCATCATTTATTAATTTC
GAAATCATCAAAAGATGATCGTACAACAACACAAGTTCAAGAGTTAATTAGCGATGATAAAGTAGATGAAATTGCACGAA
TGATTTCAGGTGCAAGTGTTACTGATTTAACTCGAGAAAATGCAAGAGAAATGATACAACACAATCAAAGACGTAGATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.234

100

0.44