Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   CNQ82_RS09640 Genome accession   NZ_CP033460
Coordinates   2008341..2009057 (+) Length   238 a.a.
NCBI ID   WP_123145083.1    Uniprot ID   -
Organism   Staphylococcus debuckii strain SDB 2975     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2003341..2014057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ82_RS09615 (CNQ82_09615) - 2004607..2005407 (+) 801 WP_123145080.1 carbon-nitrogen family hydrolase -
  CNQ82_RS13470 (CNQ82_09620) - 2005714..2005794 (-) 81 WP_047132799.1 delta-lysin family phenol-soluble modulin -
  CNQ82_RS09625 (CNQ82_09625) - 2006292..2006864 (+) 573 WP_123145081.1 accessory gene regulator AgrB -
  CNQ82_RS09630 (CNQ82_09630) agrD 2006872..2007009 (+) 138 WP_095104393.1 cyclic lactone autoinducer peptide AgrD -
  CNQ82_RS13475 (CNQ82_09635) agrC 2007041..2008336 (+) 1296 WP_123145082.1 quorum-sensing sensor histidine kinase AgrC -
  CNQ82_RS09640 (CNQ82_09640) agrA 2008341..2009057 (+) 717 WP_123145083.1 quorum-sensing response regulator AgrA Regulator
  CNQ82_RS09645 (CNQ82_09645) - 2009136..2010599 (-) 1464 WP_123145084.1 GH32 C-terminal domain-containing protein -
  CNQ82_RS09650 (CNQ82_09650) - 2010812..2011897 (+) 1086 WP_123145085.1 YeeE/YedE family protein -
  CNQ82_RS09655 (CNQ82_09655) - 2011924..2012148 (+) 225 WP_095104383.1 sulfurtransferase TusA family protein -
  CNQ82_RS09660 (CNQ82_09660) - 2012260..2012904 (-) 645 WP_123145086.1 redox-sensing transcriptional repressor Rex -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27880.79 Da        Isoelectric Point: 4.8624

>NTDB_id=323866 CNQ82_RS09640 WP_123145083.1 2008341..2009057(+) (agrA) [Staphylococcus debuckii strain SDB 2975]
MKIIICEDDLQQRSHIEEIINNYIMIEEKPLEIVLSTADPYEVLEYAKATNEICCYFLDIQLDADINGIKLGSELRKYDT
MGSIIFITSHSELTYLTFVYKVAAMDFIFKDDPSEMKSRIIDCLETSLTRLQLLSKENNVETIELKRGSNSVYVNYDDVM
FFESSSKSHRLIAHLDNRQIEFYGSLKELSNIDDRFFRCHNSFVINRNNIEEVISKEREIHFKNGEHCYVSVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=323866 CNQ82_RS09640 WP_123145083.1 2008341..2009057(+) (agrA) [Staphylococcus debuckii strain SDB 2975]
ATGAAAATTATTATCTGTGAAGACGATCTGCAACAACGTTCTCATATCGAAGAAATTATCAATAATTATATTATGATTGA
AGAAAAACCATTAGAAATTGTTTTGTCAACTGCGGATCCTTATGAAGTATTAGAGTATGCGAAAGCAACAAACGAAATTT
GTTGCTATTTCTTGGATATCCAATTAGATGCAGATATTAATGGTATTAAACTCGGTAGTGAGTTGAGGAAATATGATACG
ATGGGCAGCATCATATTTATTACAAGTCACAGCGAACTCACTTATCTTACTTTTGTTTATAAAGTGGCTGCCATGGACTT
TATTTTTAAAGACGATCCAAGTGAAATGAAATCACGTATTATCGATTGCCTTGAGACTTCCCTCACACGTTTGCAACTTC
TTTCAAAAGAAAACAATGTAGAGACTATTGAATTAAAGAGAGGCAGCAATTCGGTATATGTGAATTACGATGATGTGATG
TTCTTTGAATCTTCCTCTAAATCGCACCGTTTAATTGCACATTTGGATAATCGCCAAATTGAATTTTATGGCAGTTTAAA
GGAACTGAGCAACATAGATGACCGCTTCTTTCGTTGCCATAACAGTTTTGTGATTAACCGCAACAATATTGAAGAAGTCA
TTTCTAAAGAACGCGAAATTCATTTTAAAAACGGCGAACATTGCTATGTCTCAGTTCGCAACCTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

78.151

100

0.782

Multiple sequence alignment