Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CNQ82_RS00095 Genome accession   NZ_CP033460
Coordinates   14588..15958 (-) Length   456 a.a.
NCBI ID   WP_123143544.1    Uniprot ID   -
Organism   Staphylococcus debuckii strain SDB 2975     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 9588..20958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ82_RS00080 (CNQ82_00080) cysE 10826..11455 (-) 630 WP_186824455.1 serine O-acetyltransferase -
  CNQ82_RS00085 (CNQ82_00085) gltX 11759..13213 (-) 1455 WP_123143542.1 glutamate--tRNA ligase -
  CNQ82_RS00090 (CNQ82_00090) - 13502..14560 (-) 1059 WP_123143543.1 PIN/TRAM domain-containing protein -
  CNQ82_RS00095 (CNQ82_00095) radA 14588..15958 (-) 1371 WP_123143544.1 DNA repair protein RadA Machinery gene
  CNQ82_RS00100 (CNQ82_00100) - 16135..18600 (-) 2466 WP_123143545.1 ATP-dependent Clp protease ATP-binding subunit -
  CNQ82_RS00105 (CNQ82_00105) - 18612..19616 (-) 1005 WP_095106897.1 protein arginine kinase -
  CNQ82_RS00110 (CNQ82_00110) - 19621..20007 (-) 387 Protein_21 UvrB/UvrC motif-containing protein -
  CNQ82_RS00115 (CNQ82_00115) - 20167..20628 (-) 462 WP_095106901.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50254.86 Da        Isoelectric Point: 7.6990

>NTDB_id=323839 CNQ82_RS00095 WP_123143544.1 14588..15958(-) (radA) [Staphylococcus debuckii strain SDB 2975]
MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEVVEKKEAPSGRGMRTREQTAKVTKLNQVQNETTPRIQTSSPEFDR
VLGGGVVQGSLVLIGGDPGIGKSTLLLQICSALSQKKKVLYITGEESLNQTKLRADRLDEDSSNLNVFAETDLEVIKEAV
KQTQPDLVVVDSIQTIYHPDINSAPGSVSQVRESTQILMGIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
EHHAYRILRAVKNRFGSTNEMGIFEMKHSGLKGVKNPSEMFLEERSTNVAGSTIVPTMEGTRPLLIEVQALVTPTTFNNP
RRMATGIDHNRLNLLMAVLEKKESYLLQQQDAYIKVAGGVRLTEPAVDLAIIASIASSFKDQPVNGMDCYVGEVGLTGEV
RRVSRIEQRVQEAAKLGFKRVIIPKTNIGGWDFPDGIQVIGVTSVHEALDFALMKR

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=323839 CNQ82_RS00095 WP_123143544.1 14588..15958(-) (radA) [Staphylococcus debuckii strain SDB 2975]
TTGGCAAAGAAAAAAGTCATTTTTGAGTGTATGGCATGTGGGTACCAATCTCCGAAATGGATGGGTAAATGTCCGAATTG
CGGAGCTTGGAACCAAATGGAAGAAGTCGTTGAAAAGAAAGAAGCACCAAGCGGCAGAGGCATGCGTACACGTGAGCAGA
CAGCGAAAGTAACGAAGCTGAATCAAGTACAAAATGAGACGACTCCACGTATTCAAACGAGTTCTCCTGAATTCGACAGA
GTCTTAGGAGGCGGTGTTGTACAAGGGTCGCTGGTCTTAATCGGCGGAGATCCAGGGATTGGTAAATCTACGTTGCTGCT
GCAAATCTGTTCAGCCTTATCACAAAAGAAAAAAGTATTATATATAACAGGTGAAGAATCACTTAACCAAACAAAATTGC
GTGCAGATCGTCTAGACGAAGATTCTAGCAATTTGAACGTATTTGCAGAAACAGATTTAGAAGTGATTAAAGAAGCGGTC
AAACAGACACAACCTGATTTAGTAGTGGTAGATTCGATTCAAACAATTTACCACCCGGATATCAATTCTGCGCCAGGTTC
GGTCTCGCAAGTAAGAGAAAGTACGCAAATTTTAATGGGCATTGCAAAGCAGATGAATATTGCGACCTTTATAGTAGGAC
ATGTAACGAAAGAAGGCCAAATTGCAGGGCCGAGATTACTAGAACACATGGTGGATACAGTATTGTATTTTGAAGGTGAT
GAACACCATGCCTATCGTATCTTGCGCGCAGTTAAAAACCGCTTCGGCTCAACTAACGAAATGGGTATTTTTGAAATGAA
ACATAGCGGATTAAAGGGCGTGAAAAATCCTTCCGAAATGTTCTTAGAAGAACGTTCTACCAATGTAGCAGGTTCGACTA
TCGTGCCAACCATGGAAGGTACCAGACCGCTATTGATTGAAGTACAAGCCTTGGTTACACCGACAACTTTCAATAATCCT
AGACGGATGGCTACAGGTATCGACCATAACCGTTTGAATTTATTGATGGCTGTACTTGAGAAGAAGGAAAGCTATTTATT
GCAACAGCAAGATGCTTATATCAAAGTAGCAGGCGGGGTCAGATTAACTGAACCAGCTGTCGATTTAGCAATTATTGCTT
CGATTGCTTCTAGTTTTAAAGATCAGCCAGTCAACGGAATGGATTGCTATGTGGGTGAAGTAGGATTGACTGGTGAAGTA
CGTCGCGTTTCACGCATTGAGCAACGCGTACAAGAAGCAGCGAAACTTGGATTTAAACGTGTGATTATCCCTAAAACAAA
TATTGGCGGTTGGGATTTCCCTGATGGAATCCAAGTTATCGGCGTCACAAGTGTACATGAAGCGCTTGATTTCGCCTTGA
TGAAACGCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(66-219)

Subunit ChlI of Mg-chelatase (ChlI)

(360-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.447

100

0.664
  radA Streptococcus pneumoniae Rx1

60.802

98.465

0.599
  radA Streptococcus pneumoniae D39

60.802

98.465

0.599
  radA Streptococcus pneumoniae R6

60.802

98.465

0.599
  radA Streptococcus pneumoniae TIGR4

60.802

98.465

0.599
  radA Streptococcus mitis NCTC 12261

60.802

98.465

0.599
  radA Streptococcus mitis SK321

60.802

98.465

0.599

Multiple sequence alignment